View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16703_high_4 (Length: 699)

Name: NF16703_high_4
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16703_high_4
NF16703_high_4
[»] chr6 (5 HSPs)
chr6 (240-542)||(7325994-7326296)
chr6 (17-217)||(7325804-7325997)
chr6 (623-689)||(7326481-7326547)
chr6 (558-623)||(7326393-7326453)
chr6 (565-608)||(6922703-6922746)
[»] chr1 (1 HSPs)
chr1 (201-260)||(51791469-51791528)
[»] chr4 (5 HSPs)
chr4 (544-608)||(35130658-35130723)
chr4 (558-608)||(13538317-13538367)
chr4 (566-607)||(49479453-49479494)
chr4 (544-608)||(17882291-17882355)
chr4 (545-608)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (565-609)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (544-608)||(30746010-30746074)
chr7 (558-608)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (565-609)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (565-605)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (544-610)||(32594558-32594625)
chr3 (565-608)||(52093594-52093637)
chr3 (565-608)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (575-609)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 240 - 542
Target Start/End: Original strand, 7325994 - 7326296
Alignment:
Q  240 tattattcttgtatttaaggaagtgaaagaaactagttggttcgaatggtaagaaattagatcaccttaaattagtggtcatgagtccaattttttgact 339  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  7325994 tattattcttgtatttaaggaagtgaaaaaaactagttggttcgaatggtaagaaattagatcaccttaaattagtgatcatgagtccaattttttgagt 7326093  T
Q  340 ctcgcataaaagaaaaaactagttcggagggaaacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaag 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7326094 ctcgcataaaagaaaaaactagttcggagggaaacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaag 7326193  T
Q  440 caaaataaggcataatctaaaatgttgtttgctgcaaataagtgaaattagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattag 539  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7326194 caaaataaggcctaatctaaaatgttgtttgctgcaaataagtgaagttagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattgg 7326293  T
Q  540 cac 542  Q
    |||    
T  7326294 cac 7326296  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 7325804 - 7325997
Alignment:
Q  17 caaatgataataccataatggtacaactatagaaaccttataagattgcatgctctaaatgagggcaagaattttctcaagaggacggagaagcacactt 116  Q
    |||||| ||| ||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7325804 caaatggtaacaccataatggtacaattatggaaaccttataaagttgcatgctctaaatgagggcaagaattttctcaagaggacggagaagcacactt 7325903  T
Q  117 c-ggggtagaagaaggtgtggtatctatcttcttgnnnnnnnnnnnnnattaaggtccaaattaattgtcgtaaaggaaaaataaataaacctatttgta 215  Q
    | ||||||||||| ||||||||||||||||||||              | |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7325904 caggggtagaagacggtgtggtatctatcttctt--------ttttttactaaggtccaaattaattgtcgttaaggaaaaataaataaacctatttgta 7325995  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 623 - 689
Target Start/End: Original strand, 7326481 - 7326547
Alignment:
Q  623 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggatagttttatcccttcat 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7326481 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggataattttatcccttcat 7326547  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 623
Target Start/End: Original strand, 7326393 - 7326453
Alignment:
Q  558 ccctactcaaattattcctgatagctaccaactgaactatacttacgggacacacttatttcttca 623  Q
    |||| |||||||||| |||| ||||||||||||||     ||||||||||||||||||||||||||    
T  7326393 ccctgctcaaattatccctggtagctaccaactga-----acttacgggacacacttatttcttca 7326453  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 608
Target Start/End: Original strand, 6922703 - 6922746
Alignment:
Q  565 caaattattcctgatagctaccaactgaactatacttacgggac 608  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  6922703 caaattattcatggtagctaccaactgaactacacttacgggac 6922746  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 51791469 - 51791528
Alignment:
Q  201 ataaacctatttgtatttccaagtttattataacaaagttattattcttgtatttaagga 260  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||||||| | |||||||||    
T  51791469 ataaacctatttgtattttcaagtttatcataactaagttattattctaggatttaagga 51791528  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 608
Target Start/End: Original strand, 35130658 - 35130723
Alignment:
Q  544 ggttcgaaccccggccc-tactcaaattattcctgatagctaccaactgaactatacttacgggac 608  Q
    ||||||||||||||||| | | ||||||||  ||| |||||||||||||||||| |||||||||||    
T  35130658 ggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacgggac 35130723  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 608
Target Start/End: Original strand, 13538317 - 13538367
Alignment:
Q  558 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 608  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  13538317 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 13538367  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 607
Target Start/End: Complemental strand, 49479494 - 49479453
Alignment:
Q  566 aaattattcctgatagctaccaactgaactatacttacggga 607  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  49479494 aaattatttctgatagctaccaactgaactacacttatggga 49479453  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 608
Target Start/End: Original strand, 17882291 - 17882355
Alignment:
Q  544 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 608  Q
    ||||||||||| | |||| | |||||||| | ||| |||||| |||||||||| |||||||||||    
T  17882291 ggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactacacttacgggac 17882355  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 545 - 608
Target Start/End: Original strand, 35010431 - 35010495
Alignment:
Q  545 gttcgaaccccggc-cctactcaaattattcctgatagctaccaactgaactatacttacgggac 608  Q
    |||||||||||| | ||| | ||||||||  |||||||||||||||||| ||| |||||||||||    
T  35010431 gttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgggac 35010495  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 609
Target Start/End: Complemental strand, 35896 - 35852
Alignment:
Q  565 caaattattcctgatagctaccaactgaactatacttacgggaca 609  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  35896 caaattatctctgatagctaccaactgaactatacttacgagaca 35852  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 608
Target Start/End: Original strand, 30746010 - 30746074
Alignment:
Q  544 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 608  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||||||  |||||||| |||||    
T  30746010 ggttcaaaccccgcccctgcacaaattattcctgatagttaccaactgagttatacttatgggac 30746074  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 608
Target Start/End: Original strand, 9667293 - 9667343
Alignment:
Q  558 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 608  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  9667293 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 9667343  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 609
Target Start/End: Complemental strand, 24793513 - 24793469
Alignment:
Q  565 caaattattcctgatagctaccaactgaactatacttacgggaca 609  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  24793513 caaattatctctgatagctaccaactgaactatacttacgagaca 24793469  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 605
Target Start/End: Complemental strand, 29097928 - 29097888
Alignment:
Q  565 caaattattcctgatagctaccaactgaactatacttacgg 605  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29097928 caaattattcctgatagttaccaactgaactacacttacgg 29097888  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 610
Target Start/End: Complemental strand, 32594625 - 32594558
Alignment:
Q  544 ggttcgaaccccggcc-ctactcaaattattcctgatagctaccaactgaactatacttacgggacac 610  Q
    ||||||||||||| || |||| ||||||||||||  || ||||||||||||||| |||||||| ||||    
T  32594625 ggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaacac 32594558  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 608
Target Start/End: Complemental strand, 52093637 - 52093594
Alignment:
Q  565 caaattattcctgatagctaccaactgaactatacttacgggac 608  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093637 caaattatccctgatagctaccaactgagccatacttacgggac 52093594  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 608
Target Start/End: Complemental strand, 52093792 - 52093749
Alignment:
Q  565 caaattattcctgatagctaccaactgaactatacttacgggac 608  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093792 caaattatccctgatagctaccaactgagccatacttacgggac 52093749  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 575 - 609
Target Start/End: Complemental strand, 2276308 - 2276274
Alignment:
Q  575 ctgatagctaccaactgaactatacttacgggaca 609  Q
    |||||||||||||||||||||||||||||| ||||    
T  2276308 ctgatagctaccaactgaactatacttacgagaca 2276274  T

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