View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_high_40 (Length: 299)
Name: NF16703_high_40
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 23362597 - 23362886
Alignment:
| Q |
3 |
catgtcgaagaatattttcacaatgttctgggtcggaaaactccgcgttattctttcagcttattatttcaagaactatcactccataactaaagacatc |
102 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23362597 |
catgtccaagaagattttcgcaatgttctgggtcggaaaactcctcgttattctttcagcttattatttcaagaactatcactccataactaaagacatc |
23362696 |
T |
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| Q |
103 |
cgattacatcgagaaacttccacgcatagcatactc---agg---------actgaaaaatatgaagttgaaactaaaattggtgacaaagtaatcttct |
190 |
Q |
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| T |
23362697 |
cgattacatcgagaaacttccacgtatagcatactcggaaggcatctatccactgaaaaatatgaagttgaaattaaaattggtgacaaagtaatcttct |
23362796 |
T |
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| Q |
191 |
aaggacataaaatttctagatatgacatggtgattggtaacaatacaatctcatataccataataagaaactcacttactaggttccagc |
280 |
Q |
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| T |
23362797 |
aaggacataaaatttctagatatgacatggtgattggtaacaatacaatctcatataccataataagaaactcacttactaggttccagc |
23362886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 280
Target Start/End: Complemental strand, 23349177 - 23348890
Alignment:
| Q |
3 |
catgtcgaagaatattttcacaatgttctgggtcggaaaactccgcgttattctttcagcttattatttcaagaactatcactccataactaaagacatc |
102 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23349177 |
catgtccaagaagattttcgcaatgttctgggtcggaaaactcctcgttattctttcagcttattatttcaagaactatcactccataacta--gacatc |
23349080 |
T |
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| Q |
103 |
cgattacatcgagaaacttccacgcatagcatactc---agg---------actgaaaaatatgaagttgaaactaaaattggtgacaaagtaatcttct |
190 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23349079 |
cgattacatcgagaaacttccacgtatagcatactcggaaggcatctatccactgaaaaatatgaagttgaaactaaaattggtgacaaagtaatcttct |
23348980 |
T |
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| Q |
191 |
aaggacataaaatttctagatatgacatggtgattggtaacaatacaatctcatataccataataagaaactcacttactaggttccagc |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23348979 |
aaggacataaaatttctagatatgacatggtgattggtaacaatacaatgccatataccataataagaaactcacttactaggttccagc |
23348890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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