View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_high_55 (Length: 227)
Name: NF16703_high_55
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 24647269 - 24647483
Alignment:
| Q |
2 |
attgttattatcattctctagtttcttgttgttttttaatcgtttcttaaacgtgtgcttgttacgaacattaaagaactaaaaatgagtttttgaactt |
101 |
Q |
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| T |
24647269 |
attgttattatcattctctagtttcttgttgtttt-taatcgtttcttaaaggtgtgcctgttacgaacattaaagaactaaaaatgagtttttgaactt |
24647367 |
T |
|
| Q |
102 |
aatacattaagtcaaaacaccaac-tttttcttaaagttgaaaaaataacgaaagttaagaatacacttgttttgatccactggaaaaaagatatgtttc |
200 |
Q |
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|||||||||| ||||||||||||| ||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24647368 |
aatacattaattcaaaacaccaacttttttttttaagttgaaacaataacgaaagttaagaat--acttgttttgatccactggaaaaaagatatgtttc |
24647465 |
T |
|
| Q |
201 |
atttgctatgtttcattt |
218 |
Q |
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|||||||||||||||||| |
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| T |
24647466 |
atttgctatgtttcattt |
24647483 |
T |
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