View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16703_high_56 (Length: 222)

Name: NF16703_high_56
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16703_high_56
NF16703_high_56
[»] chr3 (2 HSPs)
chr3 (47-212)||(13219260-13219425)
chr3 (153-212)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (48-208)||(238285-238445)
scaffold0002 (141-208)||(240602-240669)
[»] chr4 (1 HSPs)
chr4 (117-212)||(18176963-18177058)
[»] chr5 (1 HSPs)
chr5 (153-212)||(39047942-39048001)
[»] chr7 (1 HSPs)
chr7 (121-209)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (153-212)||(15664-15723)
[»] chr1 (1 HSPs)
chr1 (167-212)||(39386263-39386308)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 13219425 - 13219260
Alignment:
Q  47 tgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaata 146  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13219425 tgaattattgattgtgtcataaagacccttatgtccacggcccaatctaccccccggaggaatatgtgcttctaaaatatcttttatactgtgcccaata 13219326  T
Q  147 ccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219325 ccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 13219260  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
Q  153 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 212  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13217095 ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 13217036  T

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Target: scaffold0002 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 238285 - 238445
Alignment:
Q  48 gaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaatac 147  Q
    ||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||| |||| ||||||||||  ||||| |||||||||||||| |    
T  238285 gaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgaccccccggaggagtatgcgcttctaaaagatctttaatactgtgcccaattc 238384  T
Q  148 cgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 208  Q
    |||||||||||| |||||| ||||| ||||||||||||| || ||||||||||||||||||    
T  238385 cgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaatgatg 238445  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 240602 - 240669
Alignment:
Q  141 ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 208  Q
    ||||||||  |||| || |||||||||||||| || || || |||||||| |||||||||||||||||    
T  240602 ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg 240669  T

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Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
Q  117 tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 212  Q
    |||||||| ||| ||||||  || ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 18177058  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
Q  153 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 212  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39048001 ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt 39047942  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  121 aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 209  Q
    |||| ||||||||||  || |||||| |  |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

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Target: scaffold0380 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
Q  153 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 212  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt 15664  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
Q  167 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 212  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39386308 atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt 39386263  T

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