View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_high_6 (Length: 660)
Name: NF16703_high_6
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 19 - 651
Target Start/End: Complemental strand, 55445888 - 55445255
Alignment:
| Q |
19 |
ggggaaacatctatgcagcagccccaatgcttagaagttgcaaatattttctcttccgatattcagaagaccaaagatcagcctaataatcttgatattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55445888 |
ggggaaacatctatgcagcagccccaatgcttagaagttgcaaatattttctcttccgatattcagaagaccaaagatcagcctaataatcttgatattt |
55445789 |
T |
|
| Q |
119 |
tatcaaacgcttgcactgcatgctgtaaacaaaacttgacggaaaaatctacaaatgcatcagatcctgcaagtattgtaatggagcaagatgagtctca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55445788 |
tatcaaacgcttgcactgcatgctgtaaacaaaacttgacggaaaaatctacaaatgtatcagatcctgcaagtattgtaatggagcaagatgagtctca |
55445689 |
T |
|
| Q |
219 |
gtccattataaattcaaattatgcaagattagggtcgtcgcaaaaggctctagtgttatgtgatgacataagttgtgggatggaatcaactccagtgatt |
318 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55445688 |
gtccatcataaattcaaattatgcaagattagggtcgtcgcaaaaggctctagtgttatgtgatgacataagttgtgggatggaatcaactccagtgatt |
55445589 |
T |
|
| Q |
319 |
tgtgtagtagatcaaaaaatactaaactctctttttgagcaagagcaacaatatataaatcttcctaggccttggatgaactttacctatgtgacaaaac |
418 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55445588 |
tgtgtagtagatcaaaatatactaaactctctttttgagcaagagcaacaatatataaatcttcctaggccttggatgaactttacctatgtgacaaaac |
55445489 |
T |
|
| Q |
419 |
cgatgcttggtccatcgtctagtcttga---atatgaggtattttaattttacttgatttttatttcatcaaactctaattatataagagtaaattcgag |
515 |
Q |
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||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55445488 |
cgatgcttggtgcatcgtctcgtcttgatttttatgaggtattttacttttacttgatttttatttcatcaaactctaatcatataagagtaaattcgag |
55445389 |
T |
|
| Q |
516 |
tatgataaaataaatgtttgttatttcacttataattgtgtttagtaaagaagctaaattggaacaaattcttcaagaactcacaagcatacactatata |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55445388 |
tatgataaaataaatgtttgttatttcacttataattgtgtttagtaaagaagctaaattggaacaaattcttcaagaactcacaagcatacac--tata |
55445291 |
T |
|
| Q |
616 |
gccttatagnnnnnnnctaacaatatttaacctatg |
651 |
Q |
| |
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||||||||| |||||||||||||||||||| |
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| T |
55445290 |
gccttatagtttttttctaacaatatttaacctatg |
55445255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 374 - 573
Target Start/End: Original strand, 55470591 - 55470791
Alignment:
| Q |
374 |
taaatcttcctaggccttggatgaactttacctatgtgacaaaaccgatgcttggtccatcgtctagtcttgaatatgaggtattttaattttacttgat |
473 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||| | |
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| T |
55470591 |
taaatcttcctaggccttggttgaactttacctatgagacaaaaccgatgcttcgtccatcgtctggtcttgaatatgaggtatttaacttttacttgtt |
55470690 |
T |
|
| Q |
474 |
ttttatttcatcaaactctaattatataagagtaaa-ttcgagtatgataaaataaatgtttgttatttcacttataattgtgtttagtaaagaagctaa |
572 |
Q |
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|||||||| ||||||||||||| ||||| ||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
55470691 |
ttttatttgatcaaactctaatcatataggagtaaatttcgattataataaaataaatgttttttatttcacttataattgtgtttaataaagaagctaa |
55470790 |
T |
|
| Q |
573 |
a |
573 |
Q |
| |
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| |
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|
| T |
55470791 |
a |
55470791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 4e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 170 - 598
Target Start/End: Complemental strand, 33516277 - 33515853
Alignment:
| Q |
170 |
caaatgcatcagatcctgcaagtattgtaatggagcaagatgagtctcagtccattataaattcaaattatgcaagattagggtcgtcgcaaaaggctct |
269 |
Q |
| |
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||||||||||||||||||||||||||| |||| | ||||||||| |||| ||||| || ||||||| ||| |||||||||| |||||||| |||||| | |
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| T |
33516277 |
caaatgcatcagatcctgcaagtattgaaatgaaccaagatgagcctcaatccatcatcgattcaaaatatacaagattaggatcgtcgcagaaggctat |
33516178 |
T |
|
| Q |
270 |
agtgttatgtgatgacataagttgtgggatggaatcaactccagtgatttgtgtagtagatcaaaaaatactaaactctctttttgagcaagagcaacaa |
369 |
Q |
| |
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| || || |||||||||| | |||||||||||||||||| |||||||||||| | |||| | |||||||| ||||||||| ||||||||||||| |
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| T |
33516177 |
aaaattgtgcaatgacataagctctgggatggaatcaactcctgtgatttgtgtaatggatctacaaatactagactctctttgtgagcaagagcaa--- |
33516081 |
T |
|
| Q |
370 |
tatataaatcttcctaggccttggatgaactttacctatgtgacaaaaccgatgcttggtccatcgtctagtcttgaatatgaggtattttaattttact |
469 |
Q |
| |
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||| ||||||||| ||| |||||| || |||||| ||||| |||||||||||| |||||| || | | |||||||| |||||||||||| | ||| ||| |
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| T |
33516080 |
tatttaaatcttcatagaccttgggagagctttacttatgtaacaaaaccgatgtttggtcgattgccaagtcttgactatgaggtatttaattttgact |
33515981 |
T |
|
| Q |
470 |
tgatttttatttcatcaaactctaattatataagagtaaat-tcgagtatgataaaataaatgtttgttatttcacttataattgtgtttagtaaagaag |
568 |
Q |
| |
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| |||||||||| || || || ||| ||||| |||||||| || ||||| |||| ||||||||| |||||||||||||||||||||||| ||| ||| |
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| T |
33515980 |
ttatttttatttgataaagct--aatcatataggagtaaatgtctagtatactaaactaaatgtttcttatttcacttataattgtgtttaagaaataag |
33515883 |
T |
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| Q |
569 |
ctaaattggaacaaattcttcaagaactca |
598 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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| T |
33515882 |
ctaaattggaccaaattcttcaagaactca |
33515853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 247 - 455
Target Start/End: Complemental strand, 33499519 - 33499317
Alignment:
| Q |
247 |
ttagggtcgtcgcaaaaggctctagtgttatgtgatgacataagttgtgggatggaatcaactccagtgatttgtgtagtagatcaaaaaatactaaact |
346 |
Q |
| |
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||||||||||||||||||||| | ||||||||| | ||||||| | || || ||||||||||| ||||| ||||||||||||||| |||||||| | |
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| T |
33499519 |
ttagggtcgtcgcaaaaggctatggtgttatgtaagaacataagctttgcgacggaatcaactcttgtgatatgtgtagtagatcaacaaatactagatg |
33499420 |
T |
|
| Q |
347 |
ctctttttgagcaagagcaacaatatataaatcttcctaggccttggatgaactttacctatgtgacaaaaccgatgcttggtccatcgtctagtcttga |
446 |
Q |
| |
|
||||||||||||||| | |||||| |||||||||||| ||||| |||| ||||||||||| ||||| |||||||| | |||| |||| ||||| |
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| T |
33499419 |
ctctttttgagcaag---atcaatatgtaaatcttcctaagccttagatg---tttacctatgtaacaaagtcgatgctttatggatcgcctagacttga |
33499326 |
T |
|
| Q |
447 |
atatgaggt |
455 |
Q |
| |
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|||||||| |
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|
| T |
33499325 |
ttatgaggt |
33499317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 246 - 459
Target Start/End: Complemental strand, 33487920 - 33487710
Alignment:
| Q |
246 |
attagggtcgtcgcaaaaggctctagtgttatgtgatgacataagttgtgggatggaatcaactccagtgatttgtgtagtagatcaaaaaatactaaac |
345 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||| |||||||||| | || | |||||||||||| ||||| ||||||||||||| | || ||||||| |
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|
| T |
33487920 |
attagggtcgtcgcgaaaggttatagtgttatgcaatgacataagctttgcggcggaatcaactcctgtgatatgtgtagtagatctacaagtactaaat |
33487821 |
T |
|
| Q |
346 |
tctctttttgagcaagagcaacaatatataaatcttcctaggccttggatgaactttacctatgtgacaaaaccgatgcttggtccatcgtctagtcttg |
445 |
Q |
| |
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| ||||| |||||||||| | |||| || ||||||||| ||||||| || ||||||||||||||||| ||||| |||| || || | |||||||| |
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| T |
33487820 |
tatctttgtgagcaagag---cgatatgtatatcttcctaagccttgggagatgtttacctatgtgacaaagccgattcttgatcgattgcgtagtcttg |
33487724 |
T |
|
| Q |
446 |
aatatgaggtattt |
459 |
Q |
| |
|
| | |||||||||| |
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|
| T |
33487723 |
attctgaggtattt |
33487710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 33516493 - 33516457
Alignment:
| Q |
107 |
atcttgatattttatcaaacgcttgcactgcatgctg |
143 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |
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|
| T |
33516493 |
atcttgatattttatcaatcgcttgcactgcatgctg |
33516457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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