View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16703_low_12 (Length: 556)
Name: NF16703_low_12
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_12 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 6 - 556
Target Start/End: Original strand, 11621300 - 11621850
Alignment:
| Q |
6 |
agtgagaagaaaataaaaatggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtcc |
105 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621300 |
agtgagaagaaaataagaatggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtcc |
11621399 |
T |
|
| Q |
106 |
gtgaagatgttcaatacatcaaagacgaactcgaacgccacaaggccatcttgatggtagctgattcaatggaagacaaagaccctgaactcaaagtatg |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621400 |
gtgaagatgttcaatacatcaacgacgaactcgaacgccacaaggccatcttgatggcagctgattcaatggaagacaaagaccctgaactcaaagtatg |
11621499 |
T |
|
| Q |
206 |
ggttaaaagggttagagttattgctcaagacatggaagatgctatagatgaatactatcttcgcctcgtcgatcatcaacaaggaaaaatcagatcttat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11621500 |
ggttaaaagggttagagttattgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggaaaaatcagatcttat |
11621599 |
T |
|
| Q |
306 |
tttcacaagattcttttcggcattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621600 |
tttcacaagattcttttcggcattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgta |
11621699 |
T |
|
| Q |
406 |
ggcgtccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaacta |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11621700 |
ggcgtccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattaattttgatagtaacta |
11621799 |
T |
|
| Q |
506 |
attgcatactagacatctttaatacacaaattagaactatatttatacttt |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11621800 |
attgcatactagacatctttaatacacaaattagaactatattcatacttt |
11621850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 556
Target Start/End: Original strand, 11639796 - 11640331
Alignment:
| Q |
11 |
gaagaaaataaaaatggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaa |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
11639796 |
gaagaaaataaaaatggcagacagttcagtatcatttttattggacaagctaacatggttacttcaagaggaagtaaatctacaaagaggagtccgtgaa |
11639895 |
T |
|
| Q |
111 |
gatgttcaatacatcaaagacgaactcgaacgccacaaggccatcttgatggtagctgattcaatggaagacaaagaccctgaactcaaagtatgggtta |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11639896 |
gatgttcaatacatcaaagacgaacttgaacgccacaagtccatcttgatgttagctgattcattggaagacaaagaccctgaactcaaagtatgggtta |
11639995 |
T |
|
| Q |
211 |
aaagggttagagttattgctcaagacatggaagatgctatagatgaatactatcttcgcctcgtcgatcatcaacaaggaaaaatcagatcttattttca |
310 |
Q |
| |
|
|||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| || ||| |
|
|
| T |
11639996 |
aaagagtaagagatattgctcaagacatggaagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaatcttcttatca |
11640095 |
T |
|
| Q |
311 |
caagattcttttcggcattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgt |
410 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| || || ||| |
|
|
| T |
11640096 |
caagattgtttttggaattaagaccatgaaagctagacgcaaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgt |
11640195 |
T |
|
| Q |
411 |
ccaatcatacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgc |
510 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| || ||| ||||| ||||| || ||| ||||| |
|
|
| T |
11640196 |
ccaatcatac---------cttcaagctcaagtcaaaggctttcatcaagacttgatagtcaaggtaat-ttggaattaattttgttaataattaattat |
11640285 |
T |
|
| Q |
511 |
atactagacatctttaatacacaaattagaactatatttatacttt |
556 |
Q |
| |
|
|||| | |||| | ||| ||||||||| ||||||| | ||||||| |
|
|
| T |
11640286 |
atacaatacatgctcaatgcacaaattaaaactataatcatacttt |
11640331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 512
Target Start/End: Complemental strand, 11606258 - 11605764
Alignment:
| Q |
21 |
aaaatggcagagagttcagtatcatttttgttggagaagctaacttggttacttcaagaagaggtaaatctacaaagaggcgtccgtgaagatgttcaat |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| || || | |||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
11606258 |
aaaatggcagatagttcagtatcatttttattggacaaactgagttggttacttcaagaagaagtaattctacaaaaaggggtccgtgaagatgttcaat |
11606159 |
T |
|
| Q |
121 |
acatcaaagacgaactcgaacgccacaaggccatcttgatggtagctgattcaatggaagacaaagaccctgaactcaaagtatgggttaaaagggttag |
220 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| | | || |||| || ||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
11606158 |
acatcaaagacgaactcaaacgccacaatgccatcttaacgagagatgatgcattggaagacaaagatcctgaactcaaagtatgggttaaaagggtaag |
11606059 |
T |
|
| Q |
221 |
agttattgctcaagacatggaagatgctatagatgaatactatcttcgcctcgtcgatcatcaacaaggaaaaatcaga---tcttattttcacaagatt |
317 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |||||| || | || | |||| |||||||||| || |
|
|
| T |
11606058 |
agatattgctcaagatatggaagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttcacaaggtt |
11605959 |
T |
|
| Q |
318 |
cttttcggcattaagaccatgaaagctagacacaaaatagcttcaaatatacaaggaatcaaatcaaaagttgaagttatcttgcgtaggcgtccaatca |
417 |
Q |
| |
|
||| | ||| |||||||||||| ||||||||| |||||||||| |||| || ||||||||| |||||||||| |||| | | |||||||| | |
|
|
| T |
11605958 |
gcttttgacatcaagaccatgaaacctagacacagaatagcttcagatattaaaaaaatcaaatccaaagttgaagctatcactcaaggacgtccaatga |
11605859 |
T |
|
| Q |
418 |
tacctgatgtagcttcaagctcaagtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
512 |
Q |
| |
|
|| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
11605858 |
tatctggtgtaggttcaagctcaagtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcat |
11605764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 512
Target Start/End: Complemental strand, 14484668 - 14484598
Alignment:
| Q |
442 |
gtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
512 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
14484668 |
gtcaaaggcgttcatcaaggcttgatagtcaaagtaatgttggaatttattttgataataattaattgcat |
14484598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 512
Target Start/End: Original strand, 33735417 - 33735487
Alignment:
| Q |
442 |
gtcaaaggttttcatcaaggcttgatagtcaaggtgatgttgaaattagttttgatagtaactaattgcat |
512 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| |||| |||||||| ||| ||||||||| |
|
|
| T |
33735417 |
gtcaaaggcgttcatcaaggcttgatagtcaaggtaatgttggaatttattttgataataattaattgcat |
33735487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University