View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16703_low_16 (Length: 509)

Name: NF16703_low_16
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16703_low_16
NF16703_low_16
[»] chr4 (8 HSPs)
chr4 (18-411)||(53648148-53648541)
chr4 (230-330)||(53722941-53723041)
chr4 (224-297)||(6230182-6230255)
chr4 (219-340)||(9470977-9471096)
chr4 (224-280)||(56395606-56395662)
chr4 (219-272)||(9470373-9470426)
chr4 (231-319)||(53721799-53721887)
chr4 (355-403)||(56395487-56395535)
[»] chr1 (7 HSPs)
chr1 (18-340)||(6815715-6816037)
chr1 (18-192)||(1670672-1670847)
chr1 (219-340)||(1670848-1670969)
chr1 (219-335)||(41602786-41602901)
chr1 (224-280)||(16263827-16263883)
chr1 (219-277)||(41602178-41602235)
chr1 (356-401)||(41602048-41602093)
[»] chr8 (1 HSPs)
chr8 (218-334)||(42189144-42189260)
[»] chr2 (5 HSPs)
chr2 (224-292)||(29100085-29100153)
chr2 (234-334)||(9206775-9206875)
chr2 (224-280)||(23988377-23988433)
chr2 (223-280)||(7358024-7358081)
chr2 (355-409)||(29099968-29100022)
[»] chr7 (5 HSPs)
chr7 (224-280)||(2946588-2946644)
chr7 (224-280)||(6483657-6483713)
chr7 (224-280)||(33141993-33142049)
chr7 (224-280)||(37998011-37998067)
chr7 (234-280)||(7172038-7172084)
[»] chr6 (1 HSPs)
chr6 (224-280)||(14799577-14799633)
[»] chr5 (2 HSPs)
chr5 (224-280)||(41196133-41196189)
chr5 (408-488)||(3060020-3060094)
[»] chr3 (1 HSPs)
chr3 (224-280)||(50035432-50035488)
[»] scaffold0633 (1 HSPs)
scaffold0633 (356-401)||(3-48)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 53648541 - 53648148
Alignment:
Q  18 tgaattacatgtttcttagnnnnnnngacaatgtgcatttgggttttaaagcatattgaaaacaaagaacacaa---gaagagtgaaacataataataac 114  Q
    |||||||| ||||||||||       |||| ||| ||||||||||||||| || ||||||||||||||||||||   |||||||||||||||||||||||    
T  53648541 tgaattacgtgtttcttagtttttttgacagtgtacatttgggttttaaaccagattgaaaacaaagaacacaaagagaagagtgaaacataataataac 53648442  T
Q  115 aacaataataaattgataaaactgagtgaaacataattaggaagatagatctggtctgaataaaagatctgatggaagggatctcaacttccatgtgtga 214  Q
    || |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  53648441 aagaataataaattgataaaactgagtgaaacatacttaggaagatggatctggtctgaataaatgatctgatggaagggatctcaattcccatgtgtga 53648342  T
Q  215 gagaagaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaatgttgtttaatccttatc 314  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  53648341 g---agaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtaaacattttgatctaaatgttggttaatccttatc 53648245  T
Q  315 taatgcttcatattcattttgtaaaaggnnnnnnnnnncaccatgtctcctacagtaagtgacctattcaggtcttccaccggagacggcgccatca 411  Q
    ||||  ||||||||||||||||||||            ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  53648244 taatagttcatattcattttgtaaaaaaaaaaaaaaaacaccatgtctcctacggtaggtgacctattcaggtctcccaccggagacggcgccatca 53648148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 330
Target Start/End: Original strand, 53722941 - 53723041
Alignment:
Q  230 aagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaatgttgtttaatccttatctaatgcttcatattc 329  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||||||| | |||| |||||||| |||  ||||| |||||| |||| |||||||||    
T  53722941 aagagtaatttaaaataaaagaaaataattggatgttggaggtgtatagtaaatattttgatctaaaggttagttaattcttatcaaatggttcatattc 53723040  T
Q  330 a 330  Q
    |    
T  53723041 a 53723041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 6230255 - 6230182
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaat 297  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||  ||||| |||| ||||    
T  6230255 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaagcattttgatccaaat 6230182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 9470977 - 9471096
Alignment:
Q  219 agaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaatgttgtttaatccttatctaat 318  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||  ||||| |||| ||| |||  || |   |||||||||    
T  9470977 agaggaaagagaa-agtaatttagaataaaagagagtaattgggtgttagaggtgtgtagtaagcattttgatccaaa-gttaatttacttttatctaat 9471074  T
Q  319 gcttcatattcattttgtaaaa 340  Q
    | |||||||| |||||||||||    
T  9471075 ggttcatatttattttgtaaaa 9471096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 56395662 - 56395606
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  56395662 aaagagaatagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagta 56395606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 9470426 - 9470373
Alignment:
Q  219 agaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggt 272  Q
    |||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  9470426 agagtaaagagaagagtaatttagaataaaagaaaataattaggtgtgggaggt 9470373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 53721887 - 53721799
Alignment:
Q  231 agagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaatgttgtttaatccttatctaatg 319  Q
    ||||||| ||| |||||||||||||||||| ||||| |||||||||||||  ||||| |||| ||| |||  |||| ||||||| ||||    
T  53721887 agagtaaattaaaataaaagaaagtaattgagtgtttgaggtgtatagtaagcattttgatccaaaagttaattaacccttatccaatg 53721799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 56395535 - 56395487
Alignment:
Q  355 ccatgtctcctacagtaagtgacctattcaggtcttccaccggagacgg 403  Q
    ||||||||||||| ||| ||||||||||||||||| | |||||| ||||    
T  56395535 ccatgtctcctacggtaggtgacctattcaggtctcctaccggaaacgg 56395487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 6815715 - 6816037
Alignment:
Q  18 tgaattacatgtttcttagnnnnnnngacaatgtgcatttgggttttaaagcatattgaaaacaaagaacacaa---gaagagtgaaacataataataac 114  Q
    |||||||| ||||||||||       |||| ||||| |||| |||||||| || ||||||||||||||||||||   |||||||||||||||||||||||    
T  6815715 tgaattacgtgtttcttagtttttttgacagtgtgcgtttgagttttaaaccagattgaaaacaaagaacacaaagagaagagtgaaacataataataac 6815814  T
Q  115 aacaataataaattgataaaactgagtgaaacataattaggaagatagatctggtctgaataaaagatctgatggaagggatctcaacttccatgtgtga 214  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  6815815 aacaataataaattgataaaactaagtgaaacatacttaggaagatggatctgatctaaataaaagatctgattgaagggatctcaatttccatgtgtga 6815914  T
Q  215 gagaagaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaatgttgtttaatccttatc 314  Q
    |   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||    
T  6815915 g---agaggaaagagaagagtaatttaaaataaaagaaagtaattgggtgttggaggtgtatagcaaacattttgatctaaatgttggttaatccttatc 6816011  T
Q  315 taatgcttcatattcattttgtaaaa 340  Q
    ||||| ||||||||||||||||||||    
T  6816012 taatggttcatattcattttgtaaaa 6816037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 1670672 - 1670847
Alignment:
Q  18 tgaattacatgtttcttagnnnnnnngacaatgtgcatttgggttttaaagcatattgaaaacaaagaacacaa-gaagagtgaaacataataataacaa 116  Q
    |||||||| ||||||||||       |||| ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||    
T  1670672 tgaattacgtgtttcttagtttttatgacagtgtgcatttgggttttaaaccagattgaaaacaaagaacacaaagaagagtgaaacataataataacaa 1670771  T
Q  117 caataataaattgataaaactgagtgaaacataattaggaagatagatctggtctgaataaaagatctgatggaag 192  Q
    ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  1670772 caataataaattgataaaactgagtgaaacatacttaagaagatggatctggtctgaataaaagatctgatggaag 1670847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 1670848 - 1670969
Alignment:
Q  219 agaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaatgttgtttaatccttatctaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||||||| ||||||||||||||||    
T  1670848 agaggaaagagaagagtaatttagaataaaagaaagtaattggatgttggaggtgtatagtaaacattttaatctaaatgttggttaatccttatctaat 1670947  T
Q  319 gcttcatattcattttgtaaaa 340  Q
    | ||||||||||||||||||||    
T  1670948 ggttcatattcattttgtaaaa 1670969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 335
Target Start/End: Original strand, 41602786 - 41602901
Alignment:
Q  219 agaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaatgttgtttaatccttatctaat 318  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||  |||||  ||| |||  ||| || ||||||||| |||    
T  41602786 agagtaaagagaagagtaatttagaataaaagaaagtaattaggtgttggaggtatatagtaagcatttgaatccaaa-attgatttatccttatccaat 41602884  T
Q  319 gcttcatattcattttg 335  Q
    | |||||||| ||||||    
T  41602885 ggttcatatttattttg 41602901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 16263883 - 16263827
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  16263883 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagta 16263827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 41602235 - 41602178
Alignment:
Q  219 agaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtata 277  Q
    ||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||    
T  41602235 agaggaaagagaa-agtaatttagaataaaagagagtaattgagtgttagaggtgtata 41602178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 41602093 - 41602048
Alignment:
Q  356 catgtctcctacagtaagtgacctattcaggtcttccaccggagac 401  Q
    |||||||||||| ||| ||||||||||||||||| | |||||||||    
T  41602093 catgtctcctacggtaggtgacctattcaggtctcctaccggagac 41602048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 334
Target Start/End: Complemental strand, 42189260 - 42189144
Alignment:
Q  218 aagaggaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaatgttgtttaatccttatctaa 317  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  ||||| |||  ||| |||  |||| | ||||| ||    
T  42189260 aagagaaaagagaagagtaatttagaataaaacaaaataattgggtgttggaggtgtatagtaagcattttgattcaaaagttaattaacctttatccaa 42189161  T
Q  318 tgcttcatattcatttt 334  Q
    || ||| ||||||||||    
T  42189160 tggttcgtattcatttt 42189144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 29100153 - 29100085
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatc 292  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||| ||||    
T  29100153 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagtaaacattttgatc 29100085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 9206775 - 9206875
Alignment:
Q  234 gtaatttagaataaaagaaagtaattgggtgttggaggtgtatagtacacatttagatctaaatgttgtttaatccttatctaatgcttcatattcattt 333  Q
    |||||||||||||||||| || |||||||||||||||||||||||||   |||| |||| |||  ||  |||||||||||| |||| |||||||| ||||    
T  9206775 gtaatttagaataaaagatagcaattgggtgttggaggtgtatagtaagtattttgatccaaaaattagttaatccttatccaatggttcatatttattt 9206874  T
Q  334 t 334  Q
    |    
T  9206875 t 9206875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 23988433 - 23988377
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  23988433 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagta 23988377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 7358024 - 7358081
Alignment:
Q  223 gaaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||| || |||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  7358024 gaaagaaaatagtaatttagaataaaagaaaacaattggatgttggaagtgtatagta 7358081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 29100022 - 29099968
Alignment:
Q  355 ccatgtctcctacagtaagtgacctattcaggtcttccaccggagacggcgccat 409  Q
    ||||||||||||| ||| ||||||||||||||||| | |||||| |||| |||||    
T  29100022 ccatgtctcctacggtaggtgacctattcaggtctcctaccggaaacggagccat 29099968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 2946644 - 2946588
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  2946644 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagta 2946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 6483713 - 6483657
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  6483713 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagta 6483657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 33142049 - 33141993
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  33142049 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagta 33141993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 37998011 - 37998067
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||    
T  37998011 aaagagaagagtaaattagaataaaagaaagtaattcggtgtgggaggtatatagta 37998067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 7172038 - 7172084
Alignment:
Q  234 gtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||||||||||| | || ||||| |||||||||||||||||||    
T  7172038 gtaatttagaataaaatatagcaattgagtgttggaggtgtatagta 7172084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 14799633 - 14799577
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  14799633 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagta 14799577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 41196189 - 41196133
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  41196189 aaagagaagagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagta 41196133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 408 - 488
Target Start/End: Original strand, 3060020 - 3060094
Alignment:
Q  408 atcattgaatcactaacctagagaccataaccaaaaaagccaacccaccttttctctctcacatcgggctccgcaacttca 488  Q
    |||||||||||||||||||||||||||||||| |||||||  ||   |||||||||||||||||||| |||||||||||||    
T  3060020 atcattgaatcactaacctagagaccataacc-aaaaagc--ac---ccttttctctctcacatcggtctccgcaacttca 3060094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 50035488 - 50035432
Alignment:
Q  224 aaagagaagagtaatttagaataaaagaaagtaattgggtgttggaggtgtatagta 280  Q
    |||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||    
T  50035488 aaagagaaaagtaatttagaataaaagaaagtaattcggtgtgggaggtatatagta 50035432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 3 - 48
Alignment:
Q  356 catgtctcctacagtaagtgacctattcaggtcttccaccggagac 401  Q
    |||||||||||| ||| ||||||||||||||||| | |||||||||    
T  3 catgtctcctacggtaggtgacctattcaggtctcctaccggagac 48  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University