View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_17 (Length: 504)
Name: NF16703_low_17
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 486
Target Start/End: Complemental strand, 56175415 - 56174940
Alignment:
| Q |
11 |
cacagaaggagggtcatccattgcatcaaattcaaatatttctgcgaagattgacaatgtttttaagaaataagtatttatcattaaatgatccatatga |
110 |
Q |
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| T |
56175415 |
cacagaaggagggtcatccattgcatcaaattcaaatatttctgcgaagattgacaatgtttttaagaaataagtatttatcattaaatgatccatatga |
56175316 |
T |
|
| Q |
111 |
gatacagggaaaaaccatactcatgggttagatagtaagaggttcatatttggaatatggcgcaattaaatgatnnnnnnnntatgatactcaccattcc |
210 |
Q |
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| T |
56175315 |
gatacagggaaaaaccatactcatgcgttagatagtaagaggttcatatttggaatatggcgcaattaaatgataaaaaaaatatgatactcaccattcc |
56175216 |
T |
|
| Q |
211 |
atgaaggattagatttttggaacttgattgagctagatcttgttttcccattgcaagtaaaaacaacatatggattacagagtccgccagaatcaacagc |
310 |
Q |
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| T |
56175215 |
atgaaggattagatttttggaacttgattgagctagatcttgttttcccattgcaagtaaaaacaacatatggattacagagtccgccagaatcaacagc |
56175116 |
T |
|
| Q |
311 |
cgctatattgcttccttcaattaaagccacagttagtagccatccatctccctgtgctttaattccatgatcactacctaacataagaagaaaaaattat |
410 |
Q |
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| T |
56175115 |
cgctatattgcttccttcaattaaagccacagttagtagccatccatctccctgtgctttaattccatgatcactacctaacataagaagaaaaaattat |
56175016 |
T |
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| Q |
411 |
tttcattttccttgatatttttcctataatgagagtttaaattcatgtgaattcgtaaattaaaatatcattaaag |
486 |
Q |
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| T |
56175015 |
tttcattttccttgatatttttcctataatgagagtttaaattcatgtgaattcgtaaattaaaatatcattaaag |
56174940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 193 - 391
Target Start/End: Complemental strand, 9997209 - 9997011
Alignment:
| Q |
193 |
tatgatactcaccattccatgaaggattagatttttggaacttgattgagctagatcttgttttcccattgcaagtaaaaacaacatatggattacagag |
292 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||| || | |||| |||||||||||||||||| || |||||||| | | || |
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| T |
9997209 |
tatgatactcaccattccataaaggattagatttttggaacttgattgaactggttcttactttcccattgcaagtaaacaccacatatgggtcagagta |
9997110 |
T |
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| Q |
293 |
tccgccagaatcaacagccgctatattgcttccttcaattaaagccacagttagtagccatccatctccctgtgctttaattccatgatcactacctaa |
391 |
Q |
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| T |
9997109 |
gccaccagagtcaacagaagctaaattgtttccttcaatcaaggcaacagttaataaccatccatctccttgtgctttaattccatggtcactacctaa |
9997011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 9997323 - 9997280
Alignment:
| Q |
11 |
cacagaaggagggtcatccattgcatcaaattcaaatatttctg |
54 |
Q |
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| T |
9997323 |
cacagaaggaggatcatccattgcatcaaactcaaatatttctg |
9997280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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