View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16703_low_19 (Length: 480)

Name: NF16703_low_19
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16703_low_19
NF16703_low_19
[»] chr2 (15 HSPs)
chr2 (9-314)||(23853583-23853888)
chr2 (378-480)||(23853417-23853519)
chr2 (211-313)||(19577774-19577875)
chr2 (234-314)||(28603933-28604013)
chr2 (234-314)||(44630617-44630697)
chr2 (69-149)||(31327431-31327511)
chr2 (69-149)||(31334152-31334232)
chr2 (203-302)||(38592056-38592155)
chr2 (69-137)||(42926006-42926074)
chr2 (229-314)||(15446452-15446537)
chr2 (77-146)||(28603786-28603855)
chr2 (250-314)||(31328925-31328989)
chr2 (250-314)||(31335646-31335710)
chr2 (185-313)||(40846751-40846879)
chr2 (185-302)||(32080175-32080292)
[»] chr8 (3 HSPs)
chr8 (69-311)||(7002328-7002571)
chr8 (69-314)||(22714166-22714412)
chr8 (232-313)||(1910117-1910198)
[»] chr4 (11 HSPs)
chr4 (200-314)||(16948814-16948928)
chr4 (69-165)||(8029663-8029759)
chr4 (234-314)||(19102813-19102893)
chr4 (186-313)||(33468166-33468292)
chr4 (69-204)||(19102659-19102794)
chr4 (185-313)||(39216267-39216395)
chr4 (234-314)||(47244977-47245057)
chr4 (234-313)||(12875251-12875330)
chr4 (200-303)||(16955137-16955240)
chr4 (69-148)||(19107289-19107368)
chr4 (186-313)||(29349376-29349502)
[»] chr7 (10 HSPs)
chr7 (229-313)||(15973566-15973650)
chr7 (77-148)||(13313625-13313696)
chr7 (234-314)||(13313484-13313564)
chr7 (69-148)||(26286482-26286561)
chr7 (234-314)||(10674447-10674527)
chr7 (186-313)||(10387520-10387647)
chr7 (186-313)||(10392259-10392386)
chr7 (8-47)||(11289485-11289524)
chr7 (69-138)||(30258781-30258850)
chr7 (234-314)||(4580306-4580386)
[»] chr3 (8 HSPs)
chr3 (234-314)||(29351074-29351154)
chr3 (8-137)||(13155950-13156080)
chr3 (10-137)||(12566031-12566159)
chr3 (10-137)||(13260434-13260562)
chr3 (74-146)||(29350924-29350996)
chr3 (185-295)||(20508427-20508537)
chr3 (69-170)||(2207115-2207216)
chr3 (234-314)||(3656429-3656508)
[»] chr6 (4 HSPs)
chr6 (234-314)||(19674620-19674700)
chr6 (186-313)||(11428766-11428893)
chr6 (234-314)||(12689819-12689899)
chr6 (69-148)||(12689664-12689743)
[»] chr1 (7 HSPs)
chr1 (259-314)||(12260848-12260903)
chr1 (76-204)||(16036305-16036434)
chr1 (69-170)||(23192142-23192243)
chr1 (246-313)||(5283443-5283510)
chr1 (234-313)||(16036453-16036532)
chr1 (74-165)||(40166647-40166738)
chr1 (69-147)||(39587697-39587775)
[»] scaffold0002 (1 HSPs)
scaffold0002 (8-137)||(150908-151038)
[»] chr5 (9 HSPs)
chr5 (76-189)||(4872586-4872699)
chr5 (205-278)||(17162675-17162748)
chr5 (8-132)||(23688710-23688835)
chr5 (8-148)||(25688987-25689128)
chr5 (234-314)||(9725935-9726015)
chr5 (226-278)||(17159215-17159267)
chr5 (230-312)||(22832689-22832771)
chr5 (242-314)||(4872742-4872814)
chr5 (234-314)||(35679067-35679147)
[»] scaffold0054 (2 HSPs)
scaffold0054 (69-148)||(26134-26213)
scaffold0054 (234-314)||(26288-26368)
[»] scaffold0009 (1 HSPs)
scaffold0009 (69-137)||(147740-147808)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 23853888 - 23853583
Alignment:
Q  9 agagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactagctagctatccttttataggaagagtttataactaatacagag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853888 agagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactagctagctatccttttataggaagagtttataactaatacagag 23853789  T
Q  109 aaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatcggacaagctaaaaagaaataaactcacaaaagt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853788 aaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatcggacaagctaaaaagaaataaactcacaaaagt 23853689  T
Q  209 ggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853688 ggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagt 23853589  T
Q  309 gatatc 314  Q
    ||||||    
T  23853588 gatatc 23853583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 378 - 480
Target Start/End: Complemental strand, 23853519 - 23853417
Alignment:
Q  378 tatgttccatttcatgtgggaccccacactcaattgtttttcaatttaataactaaagttcaattacatagataccaataaaataaggtaagaagaagag 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853519 tatgttccatttcatgtgggaccccacactcaattgtttttcaatttaataactaaagttcaattacatagataccaataaaataaggtaagaagaagag 23853420  T
Q  478 gac 480  Q
    |||    
T  23853419 gac 23853417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 19577875 - 19577774
Alignment:
Q  211 aagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtga 310  Q
    ||||| |||| ||| || |||||||||||| |||||||| ||||||| ||||||| |||||||||||| || |||| | ||||||||||||| |||||||    
T  19577875 aagaaacaaactaattggatatgaatgaaggaaatatagaaaactca-ttggattctcaatcttatcaaaatcaacgtgaactaaaattatgcgaagtga 19577777  T
Q  311 tat 313  Q
    |||    
T  19577776 tat 19577774  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 28603933 - 28604013
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| |||||||| ||| ||||||| |||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  28603933 aatgaaggaaagataggaaattcagttggattctcaatcttatcataacgaacataacctaaaattatgggaagtgatatc 28604013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 44630697 - 44630617
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| |||| ||| ||| |||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  44630697 aatgaaggaaagatagaaaattcagttggattttcaatcttatcacaacaaacataacctaaaattatgagaagtgatatc 44630617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 31327431 - 31327511
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccat 149  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | |||||||||    
T  31327431 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccat 31327511  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 31334152 - 31334232
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccat 149  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | |||||||||    
T  31334152 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccat 31334232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 38592056 - 38592155
Alignment:
Q  203 aaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatg 302  Q
    |||| |||| ||| |||| ||| |||||||||||| || |||||||||| |||||||| |||  |||||||||||| || ||||||||  ||||||||||    
T  38592056 aaaaatggaggaaacaaactaaatgaatatgaatggaggaaatataggatactcaattagatactcaatcttatcacaatcaacataagttaaaattatg 38592155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 42926074 - 42926006
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaat 137  Q
    |||| |||||||||||| ||||||| ||||||||  ||||||| |||  ||||||||||||||||||||    
T  42926074 agctctccttttatagggagagtttgtaactaatttagagaaatttaagaattaagtaaacttaaaaat 42926006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 15446537 - 15446452
Alignment:
Q  229 atatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    |||||||||||| ||  ||| |||||||| || |||| ||||||||||||  | | |||||| ||||||||||| |||||||||||    
T  15446537 atatgaatgaaggaacgataagaaactcagttcgattctcaatcttatcacgacctacataagctaaaattatgtgaagtgatatc 15446452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 28603786 - 28603855
Alignment:
Q  77 ttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacc 146  Q
    ||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||    
T  28603786 ttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacc 28603855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 31328925 - 31328989
Alignment:
Q  250 gaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    |||| ||| ||||||| |||||||||||| ||  ||||||| |||||||| ||||||||||||||    
T  31328925 gaaattcagttggattctcaatcttatcacaacaaacataacctaaaattgtgagaagtgatatc 31328989  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 31335646 - 31335710
Alignment:
Q  250 gaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    |||| ||| ||||||| |||||||||||| ||  ||||||| |||||||| ||||||||||||||    
T  31335646 gaaattcagttggattctcaatcttatcacaacaaacataacctaaaattgtgagaagtgatatc 31335710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 40846879 - 40846751
Alignment:
Q  185 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 284  Q
    ||||||||| |||  |||||||||||| ||| |||| | | | ||| ||||||||| ||| ||| |||| ||||||| ||| | | |||||||| || ||    
T  40846879 aaaaagaaacaaatccacaaaagtggaggaaacaaactcattaaatttgaatgaaggaaagataagaaattcaattgaattcttattcttatcacaacca 40846780  T
Q  285 acataaactaaaattatgagaagtgatat 313  Q
     ||||||||||| ||||  ||||||||||    
T  40846779 tcataaactaaatttataggaagtgatat 40846751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 32080175 - 32080292
Alignment:
Q  185 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 284  Q
    ||||| ||| |||| |||||||| ||||||| ||||  || || |||||||||||  | | ||| |||| |||| |||||| |||||||||||| || ||    
T  32080175 aaaaataaacaaacccacaaaaggggaagaaacaaacaaattggatatgaatgaatgagagataagaaaatcaaatggattctcaatcttatcacaacca 32080274  T
Q  285 acataaactaaaattatg 302  Q
    || ||| | |||||||||    
T  32080275 acgtaagcaaaaattatg 32080292  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 311
Target Start/End: Original strand, 7002328 - 7002571
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 168  Q
    |||| |||||||||||  | ||||| ||| ||||   ||||||||||  |||||||||||||||||||| | ||||||||   |||| || |||||| ||    
T  7002328 agctctccttttatagagatagtttgtaaataatttggagaaacttaataattaagtaaacttaaaaattacgcaacccacaaatcagctcaagtaacaa 7002427  T
Q  169 acggatcggacaag-ctaaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggatttt 267  Q
    ||| ||| || |||  |||||||||| |||| |||||||||||||  |  | ||||| |  |||||||||||||||| |||| ||||| | |||||||      
T  7002428 acgaatcagataagtttaaaaagaaagaaacccacaaaagtggaatgaatagattaatttgatatgaatgaagaaaagatagaaaactgagttggattca 7002527  T
Q  268 caatcttatcataaacaacataaactaaaattatgagaagtgat 311  Q
     ||||||| || || ||||| ||||||||||||||  |||||||    
T  7002528 aaatcttaacacaaccaacacaaactaaaattatggaaagtgat 7002571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 314
Target Start/End: Complemental strand, 22714412 - 22714166
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 168  Q
    |||| ||||||||||||  |||||| ||| ||||   ||||||||||  ||||||||||||||| |||| | ||||||||  ||||| || |||||| ||    
T  22714412 agctctccttttatagggggagtttgtaaataatttggagaaacttaagaattaagtaaacttagaaattaagcaacccacagatcagctcaagtaacaa 22714313  T
Q  169 acggatcggacaagct-aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggatttt 267  Q
    ||  |||| | ||||| ||||||||| |||| || |||| | || ||| |||| | | ||||||||||||||  ||  | | |||||||||||| ||| |    
T  22714312 actaatcgcataagctaaaaaagaaacaaacccaaaaaattagatgaaacaaactcattgaatatgaatgaaagaatgacaagaaactcaattgaattct 22714213  T
Q  268 caatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
     | |||||||| |  |||||||| ||||| ||||| |||||||||||    
T  22714212 tattcttatcacagccaacataagctaaatttatgggaagtgatatc 22714166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 1910198 - 1910117
Alignment:
Q  232 tgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 313  Q
    ||||||||| ||||||| |||| ||||||  ||| | | |||||||| || || |||||| |||| ||||||||||||||||    
T  1910198 tgaatgaaggaaatataagaaattcaattaaattcttattcttatcacaaccaccataaattaaatttatgagaagtgatat 1910117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 200 - 314
Target Start/End: Original strand, 16948814 - 16948928
Alignment:
Q  200 cacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaatt 299  Q
    |||||||||| | ||| |||| ||| || ||||| |||||| | |||||||||||||| || |||| ||||||||||||||| |||||||| ||||||||    
T  16948814 cacaaaagtgaatgaaacaaactaattggatatggatgaaggagatataggaaactcagttcgattctcaatcttatcataaccaacataagctaaaatt 16948913  T
Q  300 atgagaagtgatatc 314  Q
    ||| ||| |||||||    
T  16948914 atgggaaatgatatc 16948928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 8029759 - 8029663
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaa 165  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||||  ||||| || ||||||    
T  8029759 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaa 8029663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 19102813 - 19102893
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| |||| ||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  19102813 aatgaaggaaagatagaaaattcagttggattctcaatcttatcacaacaaacataacctaaaattatgagaagtgatatc 19102893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 33468292 - 33468166
Alignment:
Q  186 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 285  Q
    |||||||| |||  |||||||||||| ||| |||| ||  ||||| ||||||||| ||||||| |||| ||||||  ||| | | ||||||||||| ||     
T  33468292 aaaagaaacaaatccacaaaagtggaggaaacaaactat-tgaatttgaatgaaggaaatataagaaattcaattaaattcttattcttatcataaccac 33468194  T
Q  286 cataaactaaaattatgagaagtgatat 313  Q
    ||||| ||||| ||||| ||||||||||    
T  33468193 cataagctaaatttatgggaagtgatat 33468166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 19102659 - 19102794
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 168  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||| ||||||||||||||| | ||||||||   |||| || |||||| ||    
T  19102659 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaatt-agtaaacttaaaaattaagcaacccacatatcagctcaagtaacaa 19102757  T
Q  169 acggatcggacaagct-aaaaagaaataaactcacaa 204  Q
    ||| || ||| ||| | ||||||||| |||| |||||    
T  19102758 acgaataggataagttcaaaaagaaacaaacccacaa 19102794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 39216395 - 39216267
Alignment:
Q  185 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 284  Q
    ||||||||| |||  |||||||||| | ||| |||| | | ||||||||||  ||| ||| |||| ||||||||||| ||| | | |||||||| || ||    
T  39216395 aaaaagaaacaaatccacaaaagtgtaggaaacaaactcattgaatatgaaccaaggaaagatagaaaactcaattgaattcttattcttatcacaacca 39216296  T
Q  285 acataaactaaaattatgagaagtgatat 313  Q
    ||||||  |||| ||||| ||||||||||    
T  39216295 acataagataaatttatgcgaagtgatat 39216267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 47244977 - 47245057
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| || ||||||||| ||| ||||||| |||||| ||||| ||  ||||||| ||||||||||| ||| |||||||    
T  47244977 aatgaaggaagtataggaaattcagttggattctcaatcatatcacaacaaacataacctaaaattatgggaaatgatatc 47245057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 12875251 - 12875330
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 313  Q
    ||||||| ||| |||||||| |||  || ||| ||||| |||||| || |||||||| ||||||||||| ||||||||||    
T  12875251 aatgaaggaaagataggaaattcagctgcattctcaatgttatcacaaccaacataacctaaaattatgggaagtgatat 12875330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 16955137 - 16955240
Alignment:
Q  200 cacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaatt 299  Q
    |||||||||||| ||| |||| ||| |  | |||||||||| ||| ||  |||||||| ||||||| |||||||||||| || ||||| ||  |||||||    
T  16955137 cacaaaagtggatgaaacaaactaatttgacatgaatgaaggaaagattagaaactcagttggattatcaatcttatcacaaccaacaaaatataaaatt 16955236  T
Q  300 atga 303  Q
    ||||    
T  16955237 atga 16955240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 19107289 - 19107368
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 148  Q
    |||| |||||||||||| ||| ||| ||||||||   |||||| |||  |||||||||||||||||||| | ||||||||    
T  19107289 agctctccttttatagggagaatttgtaactaatttggagaaatttaagaattaagtaaacttaaaaattaagcaaccca 19107368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 29349502 - 29349376
Alignment:
Q  186 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 285  Q
    |||||||| ||| ||||||||||||| ||| |||||||  || || ||||||||| ||||||| |||| | ||||  ||||| | |||||||||||  |     
T  29349502 aaaagaaacaaattcacaaaagtggaggaaacaaattat-tggatttgaatgaaggaaatataagaaatttaattaaatttttattcttatcataacaac 29349404  T
Q  286 cataaactaaaattatgagaagtgatat 313  Q
    ||||| ||||| ||||| ||| ||||||    
T  29349403 cataagctaaatttatgggaaatgatat 29349376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 15973566 - 15973650
Alignment:
Q  229 atatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 313  Q
    |||| ||||||||||| |||||||  ||||||| ||||||| |||||||| || |||||||||||||||||||| ||||| ||||    
T  15973566 atataaatgaagaaaagataggaagttcaattgtattttcagtcttatcacaaccaacataaactaaaattatgggaagttatat 15973650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 13313696 - 13313625
Alignment:
Q  77 ttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 148  Q
    ||||||||||||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||||    
T  13313696 ttttataggaagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaaccca 13313625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 13313564 - 13313484
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| ||| |||| ||  ||||||| || ||||||||| || |||||||||||||||||||| |||||||||||    
T  13313564 aatgaaggaaagatatgaaattctgttggattctcgatcttatcacaaccaacataaactaaaattatgtgaagtgatatc 13313484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 26286561 - 26286482
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 148  Q
    |||| |||||||| | | ||||||| ||||||||   ||||||||||  |||||||||||||||||||| ||||||||||    
T  26286561 agctctccttttacaaggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattatgcaaccca 26286482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 10674447 - 10674527
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| | |||||| |||| | |||| |||||||||||  || ||||||||||| |||||||| |||||||||||    
T  10674447 aatgaaggaaagagaggaaattcaactagattctcaatcttatcgcaaccaacataaactcaaattatgggaagtgatatc 10674527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 10387647 - 10387520
Alignment:
Q  186 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 285  Q
    |||||||| ||| ||||||||||||| ||| |||| |   || || ||||||||||||| ||| |||| ||||||| ||| | | |||||||| ||  |     
T  10387647 aaaagaaacaaattcacaaaagtggaggaaacaaactcgttggatttgaatgaagaaaagataagaaattcaattgaattcttattcttatcacaacaac 10387548  T
Q  286 cataaactaaaattatgagaagtgatat 313  Q
    ||||| ||||| ||||| ||||||||||    
T  10387547 cataagctaaatttatgggaagtgatat 10387520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 10392386 - 10392259
Alignment:
Q  186 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 285  Q
    |||||||| |||  |||||||||||| ||| |||| | | || || ||||||||| ||| ||| |||| ||||||| ||| | | |||||||| || ||     
T  10392386 aaaagaaacaaatccacaaaagtggaggaaacaaactcattggatttgaatgaaggaaagataagaaattcaattgaattcttattcttatcacaatcac 10392287  T
Q  286 cataaactaaaattatgagaagtgatat 313  Q
    ||||| ||||| ||||| ||||||||||    
T  10392286 cataacctaaatttatgggaagtgatat 10392259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 11289524 - 11289485
Alignment:
Q  8 gagagagaagaaaaacattcaaagttttagaatacttttc 47  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  11289524 gagagagaagaaaaagattcaaagtttcagaatacttttc 11289485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 30258781 - 30258850
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatc 138  Q
    |||| ||||| |||||| ||| ||| |||||||| |  |||||||||  |||||||||||||||||||||    
T  30258781 agctctccttatatagggagaatttgtaactaattcgaagaaacttaagaattaagtaaacttaaaaatc 30258850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 4580306 - 4580386
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| |||||||| ||| ||||||| |||||||||||| ||  |  |||| ||| ||||||| |||||||||||    
T  4580306 aatgaaggaaagataggaaattcagttggattctcaatcttatcacaacaagtataagctacaattatgggaagtgatatc 4580386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 29351074 - 29351154
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| |||||||| ||| ||| |||||||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  29351074 aatgaaggaaagataggaaattcagttgaattttcaatcttatcacaacaaacataatctaaaattatgagaagtgatatc 29351154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 13156080 - 13155950
Alignment:
Q  8 gagagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactagct-agctatccttttataggaagagtttataactaatacag 106  Q
    ||||||||||||||  |||  |||||| ||||||||| || ||| | |||||||||||| | |||| |||||||||||| |||||| || | ||||   |    
T  13156080 gagagagaagaaaagtatttgaagtttcagaatacttctcggtgcatcgaatgaactaggtgagctctccttttatagggagagttcatgattaatctgg 13155981  T
Q  107 agaaacttagaaattaagtaaacttaaaaat 137  Q
    |||||||||  | ||||||||||||||||||    
T  13155980 agaaacttaagagttaagtaaacttaaaaat 13155950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 12566159 - 12566031
Alignment:
Q  10 gagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaacta-gctagctatccttttataggaagagtttataactaatacagag 108  Q
    ||||||||||||| |||  |||||| ||||||||| || ||| | ||||||||||| || |||| | |||||||||| |||||| || | ||||   |||    
T  12566159 gagagaagaaaaatatttgaagtttcagaatacttctcggtgcatcgaatgaactaggcgagctctgcttttatagggagagttcatgattaatctggag 12566060  T
Q  109 aaacttagaaattaagtaaacttaaaaat 137  Q
    ||||||   ||||||||||||||||||||    
T  12566059 aaacttcagaattaagtaaacttaaaaat 12566031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 13260562 - 13260434
Alignment:
Q  10 gagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaacta-gctagctatccttttataggaagagtttataactaatacagag 108  Q
    ||||||||||||| |||  |||||| ||||||||| || ||| | ||||||||||| || |||| | |||||||||| |||||| || | ||||   |||    
T  13260562 gagagaagaaaaatatttgaagtttcagaatacttctcggtgcatcgaatgaactaggcgagctctgcttttatagggagagttcatgattaatctggag 13260463  T
Q  109 aaacttagaaattaagtaaacttaaaaat 137  Q
    ||||||   ||||||||||||||||||||    
T  13260462 aaacttcagaattaagtaaacttaaaaat 13260434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 29350924 - 29350996
Alignment:
Q  74 tccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacc 146  Q
    |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||    
T  29350924 tccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacc 29350996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 20508427 - 20508537
Alignment:
Q  185 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 284  Q
    |||| |||| |||| |||||||||||| ||| |||| ||| |||||||||| |||||||| ||||  || ||| |||||||   | |||||||| || ||    
T  20508427 aaaatgaaacaaacccacaaaagtggaggaaacaaactaattgaatatgaacgaagaaaagatagagaattcagttggattaatattcttatcacaacca 20508526  T
Q  285 acataaactaa 295  Q
    |||||||||||    
T  20508527 acataaactaa 20508537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 2207216 - 2207115
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 168  Q
    |||| |||||||| ||| ||||||| ||||| ||    |||||||||  |||||||||||||||||||| | ||||||||| ||||| || |||||| ||    
T  2207216 agctctccttttacagggagagtttgtaactgatttgaagaaacttaataattaagtaaacttaaaaattaagcaacccatagatcagctcaagtaacaa 2207117  T
Q  169 ac 170  Q
    ||    
T  2207116 ac 2207115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 3656508 - 3656429
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    |||||| |||| |||||||| ||| ||| ||| |||||||||||| ||  |||||||  ||||||||||||||||||||||    
T  3656508 aatgaaaaaaagataggaaattcagttg-attatcaatcttatcacaacaaacataacataaaattatgagaagtgatatc 3656429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 19674620 - 19674700
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| |||||||| ||| ||||||| |||||||||||| ||  ||||||| ||||||||||| |||||||||||    
T  19674620 aatgaaggaaagataggaaattcagttggattctcaatcttatcaaaacaaacataacctaaaattatgggaagtgatatc 19674700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 313
Target Start/End: Original strand, 11428766 - 11428893
Alignment:
Q  186 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 285  Q
    |||||||| |||  |||||||||||| ||| |||||||  ||| | ||||||||| ||||||| |||| ||||||| |||   | | |||||| || |||    
T  11428766 aaaagaaacaaatccacaaaagtggaggaaacaaattatttgattttgaatgaaggaaatataagaaattcaattgaattcatatttttatcacaaccaa 11428865  T
Q  286 cataaactaaaattatgagaagtgatat 313  Q
    ||||| ||||| ||||| ||||||||||    
T  11428866 cataagctaaatttatgggaagtgatat 11428893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 12689819 - 12689899
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| |||||||  ||| ||||||| |||||| ||||| ||  ||||||| ||||||||||| |||||||||||    
T  12689819 aatgaaggaaagataggaatttcagttggattctcaatcatatcacaacaaacataacctaaaattatgggaagtgatatc 12689899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 12689664 - 12689743
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 148  Q
    |||| |||||||||| | ||||||||||| | ||   ||||||||||  |||||||||||||||||||| | ||||||||    
T  12689664 agctctccttttataaggagagtttataattgatttggagaaacttaagaattaagtaaacttaaaaattaagcaaccca 12689743  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 12260848 - 12260903
Alignment:
Q  259 ttggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| |||||||||||| || |||||||| |||||||||||||||||||||||    
T  12260848 ttggattctcaatcttatcacaaccaacataagctaaaattatgagaagtgatatc 12260903  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 16036305 - 16036434
Alignment:
Q  76 cttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatc 175  Q
    |||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||||  ||||| || ||| || ||||  |||    
T  16036305 cttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagaaacaaactaatc 16036404  T
Q  176 ggacaagct-aaaaagaaataaactcacaa 204  Q
    ||| ||| | ||||||||| |||| |||||    
T  16036405 ggataagttcaaaaagaaacaaacccacaa 16036434  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 23192243 - 23192142
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 168  Q
    |||| |||||||||||| ||||||| ||||||||   |||||||| |  |||||||||||||||||||| | ||||||||  ||||| || |||||| ||    
T  23192243 agctctccttttatagggagagtttgtaactaatttggagaaactaaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaacaa 23192144  T
Q  169 ac 170  Q
    ||    
T  23192143 ac 23192142  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 5283510 - 5283443
Alignment:
Q  246 ataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 313  Q
    ||||||||||||||| ||||||||||||||||| ||  || |||| ||||||||| |  |||||||||    
T  5283510 ataggaaactcaattagattttcaatcttatcacaacgaatataagctaaaattaaggaaagtgatat 5283443  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 16036453 - 16036532
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 313  Q
    ||||||| ||| ||| |||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||  |||||||||    
T  16036453 aatgaaggaaagataagaaattcagttggattctcaatcttatcacaacaaacataacctaaaattatggaaagtgatat 16036532  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 40166647 - 40166738
Alignment:
Q  74 tccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaa 165  Q
    ||||||| |||| | | ||||||||||||   ||||||||||  |||||||||||||||||||| | ||||||||  ||||| || ||||||    
T  40166647 tccttttttagggataatttataactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaa 40166738  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 39587775 - 39587697
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccc 147  Q
    |||| |||||||| ||| ||||||| ||||||||   ||||||| ||  |||||||||||||||||||| | |||||||    
T  39587775 agctctccttttacagggagagtttgtaactaatttggagaaacataagaattaagtaaacttaaaaattaagcaaccc 39587697  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 150908 - 151038
Alignment:
Q  8 gagagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactagct-agctatccttttataggaagagtttataactaatacag 106  Q
    ||||||||||||||  |||  |||||| ||||||||| || ||| | |||||||||||| | |||| |||||||||||| |||||| || | ||||   |    
T  150908 gagagagaagaaaagtatttgaagtttcagaatacttctcggtgcatcgaatgaactaggtgagctctccttttatagggagagttcatgattaatctgg 151007  T
Q  107 agaaacttagaaattaagtaaacttaaaaat 137  Q
    |||||||||  | ||||||||||||||||||    
T  151008 agaaacttaagagttaagtaaacttaaaaat 151038  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 4872586 - 4872699
Alignment:
Q  76 cttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatc 175  Q
    |||||||||| ||||||| ||||||||   ||||||||||  |||||| ||||||||||||| | |||||||| | | || || |||||| |||| ||||    
T  4872586 cttttatagggagagtttgtaactaatttggagaaacttaagaattaaataaacttaaaaattaagcaacccacgtaccagctcaagtaacaaactgatc 4872685  T
Q  176 ggacaagctaaaaa 189  Q
    ||| ||| ||||||    
T  4872686 ggataagttaaaaa 4872699  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 17162675 - 17162748
Alignment:
Q  205 aagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatca 278  Q
    ||||||| ||| ||||  || ||||||||||||||||||| |||||||||||| ||||| | ||||||||||||    
T  17162675 aagtggaggaaacaaacgaattgaatatgaatgaagaaaagataggaaactcagttggactctcaatcttatca 17162748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 23688710 - 23688835
Alignment:
Q  8 gagagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactag-ctagctatccttttataggaagagtttataactaatacag 106  Q
    |||||||||||||   |||| |||||| | |||||||||  ||||| ||||| |||||| | |||| ||||||||||| || ||||| |||| |||  ||    
T  23688710 gagagagaagaaaggtattcgaagtttcaaaatacttttatgtgtagcgaattaactaggcgagctctccttttatagtaaaagtttgtaacaaatctag 23688809  T
Q  107 agaaacttagaaattaagtaaactta 132  Q
    |||||||||  |||||||||||||||    
T  23688810 agaaacttaagaattaagtaaactta 23688835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 25689128 - 25688987
Alignment:
Q  8 gagagagaagaaaaacattcaaagttttagaatacttttcagtgtaccgaatgaactag-ctagctatccttttataggaagagtttataactaatacag 106  Q
    ||||||||||||||  |||  |||||| |||||||||||| |||   | |||||||||| | |||| |||||||||||| | ||||| |||| ||| |      
T  25689128 gagagagaagaaaaggatttgaagtttcagaatacttttcggtgagtcaaatgaactaggcgagctctccttttataggtaaagtttgtaacaaatccgt 25689029  T
Q  107 agaaacttagaaattaagtaaacttaaaaatcatgcaaccca 148  Q
    |||||||||  |||||||||||||||||| | | ||||||||    
T  25689028 agaaacttaataattaagtaaacttaaaagttaagcaaccca 25688987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 9726015 - 9725935
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| |||| ||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||| ||||||||||    
T  9726015 aatgaaggaaagatagaaaattcagttggattctcaatcttatcacaataaacataacctaaaattatgaaaagtgatatc 9725935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 17159215 - 17159267
Alignment:
Q  226 tgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatca 278  Q
    ||||||||||||||||||| |||||||||| | ||||| ||||||||||||||    
T  17159215 tgaatatgaatgaagaaaagataggaaacttagttggagtttcaatcttatca 17159267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 22832771 - 22832689
Alignment:
Q  230 tatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgata 312  Q
    ||||||||||| ||| ||| || | |||||||||||  || |||||||| |||||||||||||||||| ||||  ||||||||    
T  22832771 tatgaatgaaggaaagataagatattcaattggattcacattcttatcacaaacaacataaactaaaactatggaaagtgata 22832689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 4872742 - 4872814
Alignment:
Q  242 aaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    |||||||||||| ||| ||||||| |||||||||||| ||  ||||||| ||||| ||||| | |||||||||    
T  4872742 aaatataggaaattcagttggattctcaatcttatcacaacaaacataacctaaagttatggggagtgatatc 4872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 35679147 - 35679067
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| ||| |||| ||| ||||||| | |||||||||| ||  ||||||| ||||||||||| ||||| |||||    
T  35679147 aatgaaggaaagatatgaaattcagttggattcttaatcttatcacaacaaacataacctaaaattatgggaagtaatatc 35679067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 26134 - 26213
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 148  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||| ||||||||||| | ||||||||    
T  26134 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagttaacttaaaaattaagcaaccca 26213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 26288 - 26368
Alignment:
Q  234 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 314  Q
    ||||||| ||| |||| ||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||  ||||||||||    
T  26288 aatgaaggaaagatagaaaattcagttggattctcaatcttatcacaacaaacataacctaaaattatggaaagtgatatc 26368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 147808 - 147740
Alignment:
Q  69 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaat 137  Q
    |||| |||||||||| | ||||||| ||||||||   ||||||||||  ||||| ||||||||||||||    
T  147808 agctctccttttatatggagagtttgtaactaatttggagaaacttaagaattaggtaaacttaaaaat 147740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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