View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16703_low_2 (Length: 801)

Name: NF16703_low_2
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16703_low_2
NF16703_low_2
[»] chr1 (4 HSPs)
chr1 (19-536)||(52421502-52422022)
chr1 (521-796)||(52421225-52421490)
chr1 (333-446)||(42713751-42713865)
chr1 (658-701)||(38877680-38877723)
[»] chr4 (6 HSPs)
chr4 (19-285)||(14150329-14150595)
chr4 (38-308)||(14151098-14151368)
chr4 (658-719)||(38904066-38904127)
chr4 (658-706)||(29398706-29398754)
chr4 (658-704)||(40933243-40933289)
chr4 (665-718)||(20105825-20105878)
[»] chr2 (3 HSPs)
chr2 (19-317)||(24482332-24482631)
chr2 (658-707)||(37393514-37393563)
chr2 (658-704)||(28908489-28908535)
[»] chr5 (1 HSPs)
chr5 (675-796)||(37124367-37124487)
[»] chr3 (1 HSPs)
chr3 (658-735)||(50621707-50621784)
[»] chr8 (2 HSPs)
chr8 (658-718)||(45512843-45512903)
chr8 (666-716)||(9989310-9989360)
[»] chr7 (1 HSPs)
chr7 (664-717)||(41626853-41626906)
[»] chr6 (2 HSPs)
chr6 (665-706)||(2079220-2079261)
chr6 (680-728)||(20834423-20834471)


Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 52422022 - 52421502
Alignment:
Q  19 gcatggttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctcactgtggtcttttcacaagtgggtgaactattgctttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52422022 gcatggttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctcactgtggtcttttcacaagtgggtgaactattgctttt 52421923  T
Q  119 agggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttcattgtaatattctcatcacgagaatcatccacaatatcggac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421922 agggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttcattgtaatattctcatcacgagaatcatccacaatatcggac 52421823  T
Q  219 agccattccaaagaaagaatgtcatttccctgtcaaaataacacggttgatcaaaatcacacttttaataaatcagacaaacttaggttcagattttcat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421822 agccattccaaagaaagaatgtcatttccctgtcaaaataacacagttgatcaaaatcacacttttaataaatcagacaaacttaggttcagattttcat 52421723  T
Q  319 actgtttgttaagtctagttttatggtgcacaaataagataagttttgcatcaaacacaacttattttc-acggttgaatcaataaattgcatcatggga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52421722 actgtttgttaagtctagttttatggtgcacaaataagataagttttgcatcaaacacaacttattttcgacggttgaatcaataaattgcatcatggga 52421623  T
Q  418 tcaactaagatatgataatatttattgatccatggatgaaa--acacacactcgtgtggatgatgtaagactattttccttgcgcatattaaacaaaatc 515  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52421622 tcaactaagatatgataatatttattgatccatggatgaaaacacacacactcgtgtggatgatgtaagactattttccttgcgcgtattaaacaaaatc 52421523  T
Q  516 tgttattacaacttctagtat 536  Q
    |||||||||||||||||||||    
T  52421522 tgttattacaacttctagtat 52421502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 521 - 796
Target Start/End: Complemental strand, 52421490 - 52421225
Alignment:
Q  521 ttacaacttctagtataattcaacgatggatataactaatattcactacaaagattttttgtaaatggtaaatacttctaaactccaacatataactgta 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  52421490 ttacaacttctagtataattcaacgatggatataactaatattcactacaaagattttttgtaaatggtaaa----------ctccaacatataactgta 52421401  T
Q  621 ttaaatttaaactctacttattttcaccaatctttgtaacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactct 720  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421400 ttaaatttaaactctacttattttcaccaatttttgtaacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactct 52421301  T
Q  721 acttcatacaatattatccgtcttaaagttattcaataaaatttctccttcaacatgagtggtactttcatctcac 796  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52421300 acttcatacaacattgtccgtcttaaagttattcaataaaatttctccttcaacatgagtggtactttcatatcac 52421225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 333 - 446
Target Start/End: Complemental strand, 42713865 - 42713751
Alignment:
Q  333 ctagttttatggtgcacaaataagataagttttgcatcaaacacaacttatttt-cacggttgaatcaataaattgcatcatgggatcaactaagatatg 431  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||| ||||||| |||  ||  |||||||||| ||||||  ||||||| | ||||||     
T  42713865 ctagttttatggtgcacaaatgagataagttttgcatcatgcacaagttattttccacaattcgatcaataaatcgcatcagtggatcaaatgagatatc 42713766  T
Q  432 ataatatttattgat 446  Q
    || ||| ||||||||    
T  42713765 atgatacttattgat 42713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 701
Target Start/End: Original strand, 38877680 - 38877723
Alignment:
Q  658 aacattctcatcttcgctacacttattttattctcgtgttagtt 701  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  38877680 aacatcctcatctctgctacacttattttattctcgtgttagtt 38877723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 3e-72; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 14150595 - 14150329
Alignment:
Q  19 gcatggttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctcactgtggtcttttcacaagtgggtgaactattgctttt 118  Q
    ||||||||||| || | | |||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||  ||  ||||||||| ||||||     
T  14150595 gcatggttgaacgaggtgggctgaaggttgcaagatgtggacgcttggtgcgtgtacgtctcattgtggtcttttcatgagcaggtgaactactgctttc 14150496  T
Q  119 agggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttcattgtaatattctcatcacgagaatcatccacaatatcggac 218  Q
    | ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||| ||||    
T  14150495 aaggagcacaaaatcctccttgttgaccgatgatgatggttgttgctccacttttttcactgtgagattctcatcacaagaatcatccacaatattggac 14150396  T
Q  219 agccattccaaagaaagaatgtcatttccctgtcaaaataacacggttgatcaaaatcacactttta 285  Q
    | ||| |||||   |||||||||||| || ||| | ||||||| | |||||||||||||||||||||    
T  14150395 aaccaatccaattgaagaatgtcattgccgtgtaataataacaagattgatcaaaatcacactttta 14150329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 38 - 308
Target Start/End: Original strand, 14151098 - 14151368
Alignment:
Q  38 gctgaaggttgcaagacgtggacgcttggagcgtgtacgtctcactgtggtcttttcacaagtgggtgaactattgcttttagggagcacaaaatcctcc 137  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||||| |  ||||||||||||| |||||| | |||||||||||||||||    
T  14151098 gctgaagcttgcaggacgtggacgcttggagcgtgtacgtatcattgtggtctttttatgagtgggtgaactactgctttcatggagcacaaaatcctcc 14151197  T
Q  138 ttgttgactgatgatgatggatgttgctccacttttttcattgtaatattctcatcacgagaatcatccacaatatcggacagccattccaaagaaagaa 237  Q
    |||| ||||||||||||||| |||||||||||||||||||  || | ||||||||| | ||||||||||||||||| |||||  ||   |||  ||||||    
T  14151198 ttgtagactgatgatgatggttgttgctccacttttttcacagtgagattctcatctcaagaatcatccacaatattggaca-acaaaacaattaaagaa 14151296  T
Q  238 tgtcatttccctgtcaaaataacacggttgatcaaaatcacacttttaataaatcagac-aaacttaggttc 308  Q
    ||||||| ||||||   ||||||| | ||||||||||||||||||||| ||||  |||| ||||||||||||    
T  14151297 tgtcattgccctgtagtaataacaagattgatcaaaatcacacttttattaaaatagacaaaacttaggttc 14151368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 719
Target Start/End: Original strand, 38904066 - 38904127
Alignment:
Q  658 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactc 719  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||| || | || |||||||||    
T  38904066 aacattctcatctttgctacacttattttattcttgtgttggttttttactgcccaacactc 38904127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 658 - 706
Target Start/End: Complemental strand, 29398754 - 29398706
Alignment:
Q  658 aacattctcatcttcgctacacttattttattctcgtgttagttcttca 706  Q
    ||||| ||||||| ||||||||||||||||||||| |||| ||||||||    
T  29398754 aacatcctcatctccgctacacttattttattctcatgttggttcttca 29398706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 704
Target Start/End: Original strand, 40933243 - 40933289
Alignment:
Q  658 aacattctcatcttcgctacacttattttattctcgtgttagttctt 704  Q
    ||||| ||||||| |||||||||||||||| ||||||||| ||||||    
T  40933243 aacatcctcatctacgctacacttattttactctcgtgttggttctt 40933289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 718
Target Start/End: Original strand, 20105825 - 20105878
Alignment:
Q  665 tcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 718  Q
    |||||| ||||||| |||| ||||||| |||||||| ||||| |||||||||||    
T  20105825 tcatctccgctacatttatattattcttgtgttagtccttcactgtccaacact 20105878  T

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Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 24482332 - 24482631
Alignment:
Q  19 gcatggttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctcactgtggtcttttcacaagtgggtgaactattgctttt 118  Q
    ||||||||||| || || ||||| ||||| || ||| ||||||||||||| |||||||||||| ||| |||||| ||| ||||||||||||| ||||||     
T  24482332 gcatggttgaacga-ggaagctgcaggtt-catgacatggacgcttggagtgtgtacgtctcattgtagtctttccaccagtgggtgaactactgctttc 24482429  T
Q  119 agggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttcattgtaatattctcatcacgagaatcatccacaatatcggac 218  Q
    | ||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||| | || |||||||| |||||||| |||||||| ||||    
T  24482430 aaggagcaccaaatcctccttgttgaccgatgatgatggttgttgcttcacttttttcactgtgagatactcatcacaagaatcat-cacaatattggac 24482528  T
Q  219 agccattccaaagaaagaatgtcatttccct---gtcaaaataacacggttgatcaaaatcacacttttaataaatcagac-aaacttaggttcagattt 314  Q
    ||||| |||||   |||||||||||| ||||    | | ||||||| | ||||||||||||||| ||||| | || || || |||||||||||| ||| |    
T  24482529 agccaatccaattgaagaatgtcattaccctataataataataacaagattgatcaaaatcacaattttattgaaacaaacaaaacttaggttctgatct 24482628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 707
Target Start/End: Original strand, 37393514 - 37393563
Alignment:
Q  658 aacattctcatcttcgctacacttattttattctcgtgttagttcttcat 707  Q
    ||||| ||| ||||| |||||||||||||||||||||||| |||||||||    
T  37393514 aacatcctcgtcttctctacacttattttattctcgtgtttgttcttcat 37393563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 704
Target Start/End: Original strand, 28908489 - 28908535
Alignment:
Q  658 aacattctcatcttcgctacacttattttattctcgtgttagttctt 704  Q
    ||||||||||||| |||||||||||||||| ||||||| | ||||||    
T  28908489 aacattctcatctccgctacacttattttactctcgtgctggttctt 28908535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 796
Target Start/End: Complemental strand, 37124487 - 37124367
Alignment:
Q  675 tacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaatattatccgtcttaaagttattcaataaaatttctccttcaac 774  Q
    |||||| ||| |||||||||||| | ||||||  ||||||||||||| |||||| || ||| || |||||| | || | |||| |||||||||||| |||    
T  37124487 tacactgattgtattctcgtgttgggtcttcaccgtccaacactcta-ttcatataacattgtcggtcttacacttgtccaatgaaatttctcctttaac 37124389  T
Q  775 atgagtggtactttcatctcac 796  Q
     |||||||||||||||| ||||    
T  37124388 ttgagtggtactttcatttcac 37124367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 658 - 735
Target Start/End: Original strand, 50621707 - 50621784
Alignment:
Q  658 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaatatt 735  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||| | |||  ||||||||  |||| ||||||||    
T  50621707 aacattctcatctccgctacacttattttatcctcgtattagttcttgactgttgaacactctgtttcacacaatatt 50621784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 658 - 718
Target Start/End: Original strand, 45512843 - 45512903
Alignment:
Q  658 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 718  Q
    ||||||||||||| |||||  ||||||||||| ||||||| |||||||| |||||||||||    
T  45512843 aacattctcatctccgctatgcttattttattttcgtgttggttcttcaatgtccaacact 45512903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 666 - 716
Target Start/End: Original strand, 9989310 - 9989360
Alignment:
Q  666 catcttcgctacacttattttattctcgtgttagttcttcattgtccaaca 716  Q
    ||||||| |||| ||||||||||| || | |||||||||||||||||||||    
T  9989310 catcttcactacgcttattttattttcattttagttcttcattgtccaaca 9989360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 717
Target Start/End: Complemental strand, 41626906 - 41626853
Alignment:
Q  664 ctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacac 717  Q
    ||||||| ||||||||| |||||| |||| |||||||||||||||||| |||||    
T  41626906 ctcatctccgctacactaattttactctcatgttagttcttcattgtcaaacac 41626853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 665 - 706
Target Start/End: Complemental strand, 2079261 - 2079220
Alignment:
Q  665 tcatcttcgctacacttattttattctcgtgttagttcttca 706  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  2079261 tcatctccgctacgcttattttattctcgtgttagttcttca 2079220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 680 - 728
Target Start/End: Original strand, 20834423 - 20834471
Alignment:
Q  680 ttattttattctcgtgttagttcttcattgtccaacactctacttcata 728  Q
    |||||||||||||||||||| |||||||||  |||||||||| ||||||    
T  20834423 ttattttattctcgtgttagatcttcattgctcaacactctatttcata 20834471  T

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