View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_20 (Length: 479)
Name: NF16703_low_20
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 208 - 471
Target Start/End: Original strand, 36659348 - 36659609
Alignment:
| Q |
208 |
atctcacctttcatgcttctcgcaagctcctcaattttcccattttgtcccttaagcgatataaacatcataccacgtgggtgtcgatcctccatgtacc |
307 |
Q |
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| T |
36659348 |
atctcacctttcatgcttctcgcaagctcctcaattttcccattttgtcccttaagcgatgtaaacatca--ccacgtgggtgtcgatcctccatgtacc |
36659445 |
T |
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| Q |
308 |
cttcctcaaaatccttggccccaagatcctgcaagtgctagaatattcatgggtgcatcaatataatatatatcaatcaataaacaacgcagaatatgat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36659446 |
cttcctcaaaatccttggccccaagatcctgcaagtgctagaatattcatgggtgcatcaatataatatatatcaatcaataaacaacgcagaatatgat |
36659545 |
T |
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| Q |
408 |
atttttaacaattacataaataacttgtttcacctgaagtagtgtaaggtaaccaacctatgct |
471 |
Q |
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| T |
36659546 |
atttttaacaattacataaataacttgtttcgcctgaagtagtgtaaggtaaccaacctatgct |
36659609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 36659183 - 36659285
Alignment:
| Q |
45 |
ttttgggcttttgatttaaagcnnnnnnn-tgaagaaacttctcacacctgaaaattagtttggacgtacacaactaataaatatttaaattttgtatcc |
143 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36659183 |
ttttgggcttttgatttaaagcaaaaaaaatgaagaaacttttcacacctgaaaattagtttggacgtacacaactaataaatatttaaattttgtatcc |
36659282 |
T |
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| Q |
144 |
ttt |
146 |
Q |
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||| |
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| T |
36659283 |
ttt |
36659285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 32079295 - 32079370
Alignment:
| Q |
257 |
ccttaagcgatataaacatcataccacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaag |
332 |
Q |
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| T |
32079295 |
ccttaagcggtgtaaacatcctaacacgtgagtgtcgatcctccatgtacccttactcaaaatccttggtcccaag |
32079370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 22719155 - 22719080
Alignment:
| Q |
256 |
cccttaagcgatataaacatcataccacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaa |
331 |
Q |
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|||||||| ||| ||||||| || |||| |||||||||| ||||||||| |||||||||||||||||||| |||| |
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| T |
22719155 |
cccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgtatccttcctcaaaatccttggctccaa |
22719080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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