View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16703_low_24 (Length: 461)
Name: NF16703_low_24
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_24 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 45078279 - 45077845
Alignment:
| Q |
11 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
45078279 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtg |
45078180 |
T |
|
| Q |
111 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
45078179 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
45078080 |
T |
|
| Q |
211 |
cgaatgtgactatcgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaa |
310 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45078079 |
agaatgtgactattgcgggcaaacttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaa |
45077980 |
T |
|
| Q |
311 |
gaaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtcctttt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
45077979 |
gaaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtgaattgctgcaagagaaggaaattgaatgtcctttt |
45077880 |
T |
|
| Q |
411 |
ccaacagataaactagccatcgaaaatgttcaatt |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
45077879 |
ccaacagataaactagccatcgaaaatgttcaatt |
45077845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Complemental strand, 45082574 - 45082141
Alignment:
| Q |
12 |
acagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtgt |
111 |
Q |
| |
|
|||||||| ||| |||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
45082574 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
45082475 |
T |
|
| Q |
112 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgctac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
45082474 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
45082375 |
T |
|
| Q |
212 |
gaatgtgactatcgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaag |
311 |
Q |
| |
|
|||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45082374 |
gaatgtgactattgcgggcaaagttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaag |
45082275 |
T |
|
| Q |
312 |
aaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtccttttc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45082274 |
aaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtccttttc |
45082175 |
T |
|
| Q |
412 |
caacagataaactagccatcgaaaatgttcaatt |
445 |
Q |
| |
|
||| |||||||||| |||| |||||||||||||| |
|
|
| T |
45082174 |
caagagataaactacccattgaaaatgttcaatt |
45082141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 442
Target Start/End: Complemental strand, 45075048 - 45074615
Alignment:
| Q |
12 |
acagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtgt |
111 |
Q |
| |
|
|||||||| ||| ||||||| ||| | || |||||||||| || | ||||||||||||||| |||||||||||| ||||| | |||||||||||||| | |
|
|
| T |
45075048 |
acagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttt |
45074949 |
T |
|
| Q |
112 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgctac |
211 |
Q |
| |
|
||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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|
| T |
45074948 |
tttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaa |
45074849 |
T |
|
| Q |
212 |
gaatgtgactatcgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaag |
311 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45074848 |
gaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtttctaatgcgactattgaaatgagtgcacataagaag |
45074749 |
T |
|
| Q |
312 |
aaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaa---ttgaatgtcctt |
408 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||| ||||| |||||| |||| |||||||||||| |
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|
| T |
45074748 |
aaacttccatggaattgcactgatgtttctggagttacaagtaatgtgagtcctacaccctgtgaattgctggcagagaaagaaaaatttgaatgtcctt |
45074649 |
T |
|
| Q |
409 |
ttccaacagataaactagccatcgaaaatgttca |
442 |
Q |
| |
|
||||||| |||||||| |||| ||||||||||| |
|
|
| T |
45074648 |
ttccaactgataaacttaccattgaaaatgttca |
45074615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 442
Target Start/End: Complemental strand, 45067489 - 45067058
Alignment:
| Q |
11 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtg |
110 |
Q |
| |
|
||||||||| ||| ||||||| ||| | || || |||||||| || | ||||||||| || ||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
45067489 |
cacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgtt |
45067390 |
T |
|
| Q |
111 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgcta |
210 |
Q |
| |
|
|||||||||||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||| |
|
|
| T |
45067389 |
ttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgcta |
45067290 |
T |
|
| Q |
211 |
cgaatgtgactatcgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaa |
310 |
Q |
| |
|
||||||||| || ||||| ||||||| |||||||| || |||||||| || || ||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
45067289 |
agaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatgagtgcacagaagaa |
45067190 |
T |
|
| Q |
311 |
gaaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtcctttt |
410 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||| |||| |||||||||||| |
|
|
| T |
45067189 |
taatcttccatggaattgcactgatgtttctggagttgcaagtaatgcggttcctaaaccatgtgatatgctgccagagaagaaaatcgaatgtcctttt |
45067090 |
T |
|
| Q |
411 |
ccaacagataaactagccatcgaaaatgttca |
442 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |
|
|
| T |
45067089 |
ccaacagataaactacccattgaaaatgttca |
45067058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 12 - 422
Target Start/End: Complemental strand, 34504823 - 34504404
Alignment:
| Q |
12 |
acagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaat---gaaatatg |
108 |
Q |
| |
|
|||||||| ||| ||||||| ||||| || ||||||||||| | | ||||||||||||||| ||||||||| || | ||||| ||||| || ||||| |
|
|
| T |
34504823 |
acagaatcagctgttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatg |
34504724 |
T |
|
| Q |
109 |
tgttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgc |
208 |
Q |
| |
|
|||||||| ||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||| |||||| | || ||||||||||| ||| |
|
|
| T |
34504723 |
tgttttggttgacagggtcttatggagaccaccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattgc |
34504624 |
T |
|
| Q |
209 |
tacgaatgtgactatcgcaggcaaacttgaaggaatttcgaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcac----- |
303 |
Q |
| |
|
|| ||||||||| | || || |||||||||||||||| || || |||||||| || |||||| |||||||||||||||||||| | || | | |
|
|
| T |
34504623 |
taagaatgtgaccgttgcggggcaacttgaaggaatttctaatgatccttttacagggatatgtatttctaatgtgactattgaattaagcgagcttaag |
34504524 |
T |
|
| Q |
304 |
-ataagaagaaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaat |
402 |
Q |
| |
|
| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
34504523 |
aagaagaagaaacttccatggaattgcacagatgtttctggagttacaagtaatgtggttcctaaaccatgtgatctgctgtcagagaagaaaattgaat |
34504424 |
T |
|
| Q |
403 |
gtccttttccaacagataaa |
422 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
34504423 |
gtccctttccaacagataaa |
34504404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 337 - 441
Target Start/End: Complemental strand, 12698125 - 12698021
Alignment:
| Q |
337 |
tttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtccttttccaacagataaactagccatcgaaaa |
436 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
12698125 |
tttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattgaaaa |
12698026 |
T |
|
| Q |
437 |
tgttc |
441 |
Q |
| |
|
||||| |
|
|
| T |
12698025 |
tgttc |
12698021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 17584522 - 17584404
Alignment:
| Q |
16 |
aatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatgtatttgaatacaatgaaatatgtgttttg |
115 |
Q |
| |
|
|||| ||||||||||| ||| |||| || |||||||| || | |||||| | || || || | ||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
17584522 |
aatcagctattagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttg |
17584423 |
T |
|
| Q |
116 |
gatgacaggttcttatgga |
134 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
17584422 |
gatgacaggttcatatgga |
17584404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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