View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_27 (Length: 429)
Name: NF16703_low_27
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 81 - 419
Target Start/End: Complemental strand, 24232933 - 24232597
Alignment:
| Q |
81 |
tgatctatcatatcatgtcttcctcctcaatgatttggtgttaatttgtttagtctaacagaactatgggctgtgcattttaatgcggccttatctaaga |
180 |
Q |
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| T |
24232933 |
tgatctatcatatcatgtcttcctcctcaatgatttggtgttaatttgt--agtctaatagaactatgggctgtgcattttaatgcggccttatctaaga |
24232836 |
T |
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| Q |
181 |
aattttgagcacaggcttactacagagtttatgttccaaaggacatgagtcacgataaattgcttgcgttagaatagtagattaggactagaactagcac |
280 |
Q |
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| T |
24232835 |
aattttgagcacaggcttactacagagtttatgttccaaaggacatgagtcacgataaattgcttgcgttagaatagtagattaggactagaactagcac |
24232736 |
T |
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| Q |
281 |
atcataccgattagcattagttgtatttattaaatatgctattataaatagatgtaagtgcggtctgacttagacacacaaattgcaaacataatatggt |
380 |
Q |
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| T |
24232735 |
atcatatcgattagcattagttgtatttattaaatatgctattataaatagatgtaagtgcggtctgacttagacacacaaattgcaaacataatatggt |
24232636 |
T |
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| Q |
381 |
attagagcatgttatgttatatgaccagtgaggttcatc |
419 |
Q |
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| T |
24232635 |
attagagcatgttctgttatatgaccagtgaggttcatc |
24232597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 24233482 - 24233420
Alignment:
| Q |
19 |
gtgttagactttagtgtttgagcattgcgaaagttcttgtaagaatgaaattccaaatgcaat |
81 |
Q |
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| T |
24233482 |
gtgttagactttagtgtttgagcattgcgaaagttcttgtaagaatggaattccaaatgcaat |
24233420 |
T |
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