View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16703_low_29 (Length: 393)
Name: NF16703_low_29
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_29 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 39905892 - 39906263
Alignment:
| Q |
17 |
actctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccac |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39905892 |
actctttatgaaagggtatggtttgataccttatggctattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctccat |
39905991 |
T |
|
| Q |
117 |
tttctctataaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39905992 |
tttctctataaatatgtcttggggcatatgcaaaagataattctatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctat |
39906091 |
T |
|
| Q |
217 |
ccaagataattggaattcaagatcatcgaagagcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaat |
316 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39906092 |
ccaacataattggaattcaagatcatcgaagagcatacatactcgttgacaatcaatggctttaagaggtaagttctaaaccctcttatttaattttaat |
39906191 |
T |
|
| Q |
317 |
ggtgtcctaattcatgcaactatgatcaaggtttattgttcatcatgtgtaaattatatttcatgatctgtg |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39906192 |
ggtgtcctaattcatgcaactatgatcaaggtttattgttcatcatgtgtaaattatatttcatgatctgtg |
39906263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 25019927 - 25019552
Alignment:
| Q |
17 |
actctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccac |
116 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25019927 |
actctgtatgaaagggtatggtttgataccttatgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctccac |
25019828 |
T |
|
| Q |
117 |
tttctctataaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctat |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25019827 |
tttctctataaatatgtcttggggattatgcaaaagacaattccatgttattacatacttacccatcaaagtttgagaaagaaggagaggaagatcctat |
25019728 |
T |
|
| Q |
217 |
ccaagataattggaa-ttcaagatcatcgaagagcatacatactcgttgacaatcaatggct---tcaagaggtaagttctaaaccctcttatttaattt |
312 |
Q |
| |
|
|||| |||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25019727 |
ccaacataattggaatttcaagatcatcaaagatcatacatactcgttgacaatcaatggcttcatcaagaggtaagttctaaaccctcttatttaattt |
25019628 |
T |
|
| Q |
313 |
taatggtgtcctaattcatgcaactatgatcaaggtttattgttcatcatgtgtaaattatatttcatgatctgtg |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||| |
|
|
| T |
25019627 |
taatggtgtcctaattcatgcaactatgatcaaggtttattgctcatcatgtgtatattacatttcatgatatgtg |
25019552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 54903858 - 54903811
Alignment:
| Q |
21 |
tttataaaagggtatggtttgataccttatgactattcataaaagaat |
68 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54903858 |
tttacaaaaaggtatggtttggtaccttatgactattcataaaagaat |
54903811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 25019450 - 25019417
Alignment:
| Q |
279 |
caagaggtaagttctaaaccctcttatttaattt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25019450 |
caagaggtaagttctaaaccctcttatttaattt |
25019417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 42256971 - 42257265
Alignment:
| Q |
17 |
actctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42256971 |
actctttataaaagggtatggtttgataccttataactattcatgaaagaattgatagagccattgtaaccctacatgaaagggtaggtcccctctccac |
42257070 |
T |
|
| Q |
117 |
tttctctataaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42257071 |
tttctctataaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctat |
42257170 |
T |
|
| Q |
217 |
ccaagataattggaattcaagatcatcgaagagcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42257171 |
ccaagataattggaattcaagatcatcgaagagcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaatt |
42257265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 27 - 388
Target Start/End: Complemental strand, 40887528 - 40887164
Alignment:
| Q |
27 |
aaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctcta-t |
125 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| |||||||| ||||||||||||||||| | |
|
|
| T |
40887528 |
aaaggatatggtttgataccttatgactattcatgaaagaattggtagaaccgttgtaaccctacatgaaaaggtaggtctcctctccactttctctaat |
40887429 |
T |
|
| Q |
126 |
aaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctatccaagata- |
224 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||||||| ||||||| ||||||| ||| |
|
|
| T |
40887428 |
aaatatgtcttggggcatatgcagaagatttatccatgatactacatacttacccatcaaagtttgagaaagaaggagatgaagatcgtatccaacatat |
40887329 |
T |
|
| Q |
225 |
-attggaattcaagatcatcgaagagcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaatggtgtcc |
323 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||| |||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
40887328 |
aattggaattcaagattatcaaagagcatacatacacgttgacaatcaatgggttcaagagataagttctaaactcttttatgtaattttaatggtgtcc |
40887229 |
T |
|
| Q |
324 |
taattcatgcaactatgatcaaggtttattgttcatcatgtgtaaattatatttcatgatctgtg |
388 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
40887228 |
taattcatgcaactattatcgaagtttattgtttatgatgtgtaaattatatttcatgatctgtg |
40887164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 22382148 - 22381910
Alignment:
| Q |
17 |
actctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccac |
116 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22382148 |
actctttatgaaagggtatagtttgataccttatgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctccat |
22382049 |
T |
|
| Q |
117 |
tttctctataaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22382048 |
tttctctataaatatgtcttggggcatatgcaaaagataattccatattatcacatgcttacctatcaaagtttgagaaagaaggagaggaagatcctat |
22381949 |
T |
|
| Q |
217 |
ccaagataattggaattcaagatcatcgaagagcataca |
255 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22381948 |
ccaacataattggaattcaagatcatcgaagagcataca |
22381910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 42258195 - 42258280
Alignment:
| Q |
303 |
tatttaattttaatggtgtcctaattcatgcaactatgatcaaggtttattgttcatcatgtgtaaattatatttcatgatctgtg |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42258195 |
tatttaattttaatggtgtcctaattcatgcaactatgatcaaggtttattattcatcatgtgtaaattatatttcatgatctgtg |
42258280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 312 - 387
Target Start/End: Original strand, 22391447 - 22391523
Alignment:
| Q |
312 |
ttaatggtgtcctaattcatgcaa-ctatgatcaaggtttattgttcatcatgtgtaaattatatttcatgatctgt |
387 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
22391447 |
ttaatggtgtcctaattcatgcaaactatgatcaaggtttattgttcattatgagtaaattatatttcatgatctgt |
22391523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 125 - 388
Target Start/End: Complemental strand, 17480735 - 17480474
Alignment:
| Q |
125 |
taaatatgtcttggggcatatgcaaaagataattccatattatcacatacttacctatcaaagtttgagaaagaaggagaggaagatcctatccaagata |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17480735 |
taaatatgtcttggggcatatgcaaaagattat-ccatattattacatacttacccatcaaaatttgggaaagaaggagaggaagatcctatccaagata |
17480637 |
T |
|
| Q |
225 |
attggaattcaagatcatcgaagagcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaatggtgtcct |
324 |
Q |
| |
|
|||| ||||||||||| || |||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
17480636 |
attgaaattcaagatcgtcaaagagcatgcatacacgttgataatcaatggcttcaagaggtaagttataaaccctcttatttaattttaattgtgtcct |
17480537 |
T |
|
| Q |
325 |
aattcatgcaactatgatcaaggtttattgttcatcatgtgtaaattatatttcatgatctgtg |
388 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||| ||| ||||||||||||||||| |||| |
|
|
| T |
17480536 |
aattcatgcaactatgatcaaattttattatacatgatg-caaaattatatttcatgatatgtg |
17480474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 17481633 - 17481523
Alignment:
| Q |
17 |
actctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccac |
116 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17481633 |
actctttatgaaagggtatcgtttgataccttgtgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctccac |
17481534 |
T |
|
| Q |
117 |
tttctctataa |
127 |
Q |
| |
|
||||||||||| |
|
|
| T |
17481533 |
tttctctataa |
17481523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 249 - 384
Target Start/End: Original strand, 22726873 - 22727008
Alignment:
| Q |
249 |
gcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaatggtgtcctaattcatgcaactatgatcaaggt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22726873 |
gcatacatactcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaatagtgtcctaattcatgcaactatgatcaaggt |
22726972 |
T |
|
| Q |
349 |
ttattgttcatcatgtgtaaattatatttcatgatc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
22726973 |
ttattgttcatcatgtgtaaattatatttcatgatc |
22727008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 14077641 - 14077673
Alignment:
| Q |
27 |
aaagggtatggtttgataccttatgactattca |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14077641 |
aaagggtatggtttgataccttatgactattca |
14077673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 36931684 - 36931767
Alignment:
| Q |
48 |
tatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataaatat |
131 |
Q |
| |
|
||||||||| ||||||| | |||||||| ||||| | || |||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
36931684 |
tatgactatacataaaatagttggtagaaccatttttactctacatgaaagggtagacatcctctacactttctcaataaatat |
36931767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 222 - 377
Target Start/End: Complemental strand, 2848965 - 2848806
Alignment:
| Q |
222 |
ataattggaattcaagatcatcgaagagcatacat----actcgttgacaatcaatggcttcaagaggtaagttctaaaccctcttatttaattttaatg |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
2848965 |
ataattggaattcaagatcatcaaagagcatacatgtatacacgtcgacaatcaatggcttcaagagttaagttctaaatcctcttatttaattttaatg |
2848866 |
T |
|
| Q |
318 |
gtgtcctaattcatgcaactatgatcaaggtttattgttcatcatgtgtaaattatattt |
377 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||| | || ||||||||||||||||| |
|
|
| T |
2848865 |
gtgtcctagttcatgcaactatgatcgaagtttatttcttatgatgtgtaaattatattt |
2848806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 46631459 - 46631538
Alignment:
| Q |
33 |
tatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctct |
112 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||| |||||||||| ||||||||||| |||| |||||||| ||| ||||| |
|
|
| T |
46631459 |
tatggtttgatatcttatagctattaatgaaataattggtagaatcattgtaacccgacattaaagggtaagtctcctct |
46631538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 2766953 - 2767003
Alignment:
| Q |
338 |
atgatcaaggtttattgttcatcatgtgtaaattatatttcatgatctgtg |
388 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
2766953 |
atgatcgaagtttattgttcataatgtgtaaattatagttcatgatttgtg |
2767003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 21340 - 21274
Alignment:
| Q |
60 |
taaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctata |
126 |
Q |
| |
|
||||||| || ||||| ||| | |||||||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
21340 |
taaaagatttagtagaaccactataaccctatatgaaagggtatgtcctctctccactttctctata |
21274 |
T |
|
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 48228824 - 48228776
Alignment:
| Q |
83 |
taaccctacatgaaagggtaggtcccctctccactttctctataaatat |
131 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
48228824 |
taaccttacataaaaggataggttccctctccactttctttataaatat |
48228776 |
T |
|
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