View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16703_low_3 (Length: 779)

Name: NF16703_low_3
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16703_low_3
NF16703_low_3
[»] chr7 (2 HSPs)
chr7 (1-770)||(31871435-31872186)
chr7 (598-685)||(23365284-23365372)
[»] chr5 (5 HSPs)
chr5 (594-770)||(14395234-14395410)
chr5 (598-686)||(13208700-13208789)
chr5 (598-689)||(2707443-2707533)
chr5 (598-661)||(34064854-34064917)
chr5 (645-734)||(13209247-13209334)
[»] chr3 (1 HSPs)
chr3 (598-686)||(42153169-42153258)
[»] scaffold0085 (1 HSPs)
scaffold0085 (598-686)||(39096-39184)
[»] chr8 (2 HSPs)
chr8 (598-689)||(29703435-29703526)
chr8 (598-649)||(5664264-5664315)
[»] chr4 (3 HSPs)
chr4 (598-658)||(56459730-56459790)
chr4 (596-686)||(4782517-4782608)
chr4 (597-663)||(30765435-30765501)
[»] chr1 (1 HSPs)
chr1 (598-658)||(19402353-19402413)


Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 770
Target Start/End: Original strand, 31871435 - 31872186
Alignment:
Q  1 atttttattagctatgttgtcagttctgcagcttgctgtaacgcgcaattgcagaatcgcgggagctatgctcgtctgcgacataattctattgtgtgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31871435 atttttattagctatgttgtcagttctgcagcttgctgtaaagcgcaattgcagaatcgcgggagctatgctcgtctgcgacataattctattgtatgtt 31871534  T
Q  101 tactgggccggcggctatcgcagctgcaaaagtgctattccagcgcgacacttcgttaacaacactcac---------gaatggaattcatgttagttct 191  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||||||||||||||| |||||     
T  31871535 tactgggccggc---tatcgcagctgcaaaagtgctattccagcgcgacactacgttaacaacactcactcttttattgaatggaattcatgtgagttcg 31871631  T
Q  192 gcattttgaaaaattggccccatttaaagtga---gacccacgtgatttcattcgagaaccagaaaaatgcccaattatgttcatgtagaagcatcaaag 288  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31871632 gcattttgaaaaattggccccatttaaagtgacgggacccacgtgatttcattcgagaaccagaaaaatgcccaattatgttcatgtagaagcatcaaag 31871731  T
Q  289 tacctaccaataacaagtaaattgaattcgctataggaaaatacccaatttacacaggaaatcgattaaggaaggattatacttacagagcgaagagaga 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31871732 tacctaccaataacaagtaaattgaattcgctataggaaaatacccagtttacacaggaaatcgattaaggaaggattatacttacagagcgaagagaga 31871831  T
Q  389 atggaacagagttctgagtgtgaagtgtagttgttgagttcagagttcagagttcagagcccatgaatgaatctcttatcgag---nnnnnnnnnnnnnt 485  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||                |    
T  31871832 atggaacagagttctgagtgtgaagtgtagctgtt-------gagttcagagttcagagcccatgaatgaatctcttatcgagtctctatgttttttttt 31871924  T
Q  486 tttccctcacatacgttgtgctgttgttgttataggataaaagggtcattttctattatccacaaatttatattcgattacagggcatttctggtgagaa 585  Q
    ||| |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||| || ||||    
T  31871925 ttttcctcacatacgttgtcttgttgttgttataggataaaagggtcattttcttttatccacaaatttatatccgattagagggcatatctagtaagaa 31872024  T
Q  586 tgagttatttatttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctatt 685  Q
    |||||||||||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||    
T  31872025 tgagttatttatttatgtgagaa----------------------ttagataaaaaatgaatggaccagattaaaagcttaacatgtatttctgcctatt 31872102  T
Q  686 ctataaaaattcatgaacccatatacgcttctttgttcttcgcgttccaataccaagcttatctctacgtttcttcttcttcttc 770  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31872103 ctataaaaattcatgaacccacatac-cttctttgttcttcgcgttccaataccaagcttatctctacgtttcttcttcttcttc 31872186  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 598 - 685
Target Start/End: Complemental strand, 23365372 - 23365284
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatt-aaaagcttaacatgtgtttcaccctatt 685  Q
    |||||||||||| || |||||| ||| |||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||    
T  23365372 ttatgtgagaattgtgagaacacttaccaacctttagataaaaaatgaatgaaccagattaaaaagcttcacatgtgtctcaccctatt 23365284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 7e-76; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 594 - 770
Target Start/End: Complemental strand, 14395410 - 14395234
Alignment:
Q  594 ttatttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctataaaa 693  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  14395410 ttatttatgtgagaatggtgagaacacttatcaacctttggataaaaaatgaatggaccagattaaaaacttaacatgagtttcaccctattctataaaa 14395311  T
Q  694 attcatgaacccatatacgcttctttgttcttcgcgttccaataccaagcttatctctacgtttcttcttcttcttc 770  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14395310 attcatgaacccacctacgcttctttgttcttcgcgttccaataccaagcttatctctacgtgtcttcttcttcttc 14395234  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 598 - 686
Target Start/End: Original strand, 13208700 - 13208789
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaacctttagataaaa-aatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 686  Q
    ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||    
T  13208700 ttatgtgagaatggtgagaacacttatcaacctttagataaaaaaatgaatggaccagattaaaagcttcacatgtgtctcaccctattc 13208789  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 598 - 689
Target Start/End: Original strand, 2707443 - 2707533
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctat 689  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||| ||||| ||||||||||||  | |||||||| | | ||||||||||    
T  2707443 ttatatgagaatggtgagaacc-ttatcaacctttagataaaaaataaatggtccagattaaaaggctcacatgtgtcttaacctattctat 2707533  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 598 - 661
Target Start/End: Complemental strand, 34064917 - 34064854
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaa 661  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| | |||||||||    
T  34064917 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaa 34064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 645 - 734
Target Start/End: Complemental strand, 13209334 - 13209247
Alignment:
Q  645 aatggaccagattaaaagcttaacatgtgtttcaccctattctataaaaattcatgaacccatatacgcttctttgttcttcgcgttcca 734  Q
    |||||| |||||||||||||| |||||||| ||||||||||| || ||  |||||||||||  | || ||||||||||||| | ||||||    
T  13209334 aatggatcagattaaaagcttcacatgtgtctcaccctattcaatcaattttcatgaaccc--acacacttctttgttctttgtgttcca 13209247  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 598 - 686
Target Start/End: Original strand, 42153169 - 42153258
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaaccttt-agataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 686  Q
    ||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  42153169 ttatgtgagaatggtgagaacacttatcagccttttagataaaaaatgaatggaccagattaaaagcttatcatgtgtctcaccctattc 42153258  T

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Target: scaffold0085 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 598 - 686
Target Start/End: Original strand, 39096 - 39184
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 686  Q
    ||||||||||| | | |||||| || |||  ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  39096 ttatgtgagaacgatgagaacacttgtcagtctttagataaaaaatgaatggaccagattaaaaacttcacatgtgtctcaccctattc 39184  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 598 - 689
Target Start/End: Complemental strand, 29703526 - 29703435
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctat 689  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||| ||||| | | ||||||| ||| |||||||| ||| ||||||||||    
T  29703526 ttatgtgagaatggtgagaacacttatcaacctttagatcaaaaattaatggtctaaattaaaaacttcacatgtgtctcatcctattctat 29703435  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 649
Target Start/End: Complemental strand, 5664315 - 5664264
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatgg 649  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| |||||    
T  5664315 ttatatgagaatggtgagaacacttatcaacctttagatgaaaaataaatgg 5664264  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 658
Target Start/End: Complemental strand, 56459790 - 56459730
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatta 658  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  56459790 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 56459730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 596 - 686
Target Start/End: Complemental strand, 4782608 - 4782517
Alignment:
Q  596 atttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatt-aaaagcttaacatgtgtttcaccctattc 686  Q
    ||||||||||||||||| |||||| |||||||  |||| ||||||| |||| ||| |||||| ||||| || |||||||| ||| |||||||    
T  4782608 atttatgtgagaatggtgagaacacttatcaatttttaaataaaaattgaaaggatcagattaaaaagtttcacatgtgtctcatcctattc 4782517  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 663
Target Start/End: Complemental strand, 30765501 - 30765435
Alignment:
Q  597 tttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagc 663  Q
    ||||||| |||||||| |||| | |||||||||||||||| |||||  | ||| |||||||||||||    
T  30765501 tttatgtaagaatggtgagaatacttatcaacctttagatcaaaaacaagtggtccagattaaaagc 30765435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 658
Target Start/End: Original strand, 19402353 - 19402413
Alignment:
Q  598 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatta 658  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  19402353 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 19402413  T

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