View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16703_low_30 (Length: 382)

Name: NF16703_low_30
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16703_low_30
NF16703_low_30
[»] scaffold0154 (2 HSPs)
scaffold0154 (13-369)||(23684-24040)
scaffold0154 (13-369)||(14264-14620)
[»] scaffold0189 (1 HSPs)
scaffold0189 (13-366)||(716-1069)


Alignment Details
Target: scaffold0154 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 24040 - 23684
Alignment:
Q  13 gagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaagagatggacggctga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24040 gagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatcgaagaaagagatggacggctga 23941  T
Q  113 gatgcttttgaatcatccttttgttgaagaagtgaagaatgttgatgagtcgtcaccaagaaatcactttgatttcaatgattgggtttctagtgagact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  23940 gatgcttttgaatcatccttttgttgaagaagtgaagaatgttgatgagtcgtcaccaagaaatcactttgatttcaatgattgggtttctagtgtgaat 23841  T
Q  213 gattcggttccgaattcaccggaattagaagagttaagtccatgggatgttgattctagtattgattctgcggtggaccggctcgggaagcttctgacgg 312  Q
    ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23840 gattctgctccgaattcaccggaattggaagagttaagtccatgggatgttgattctagtattgattctgcggtggaccggctcgggaagcttctgacgg 23741  T
Q  313 ttgaaaagccggtgagttggtcggaatcagatagttggattagtgttaggtgaaatt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23740 ttgaaaagccggtgagttggtcggaatcagatagttggattagtgttaggtgaaatt 23684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 14620 - 14264
Alignment:
Q  13 gagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaagagatggacggctga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  14620 gagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaaaagatggacggctga 14521  T
Q  113 gatgcttttgaatcatccttttgttgaagaagtgaagaatgttgatgagtcgtcaccaagaaatcactttgatttcaatgattgggtttctagtgagact 212  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||| ||||| |||||||||||||||||||||||||||||||||||   ||  | |    
T  14520 gatgcttttgaatcatccttttgttgaagaagtgattaatgttaatgaatcgtcgccaagaaatcactttgatttcaatgattgggtttccgatgctagt 14421  T
Q  213 gattcggttccgaattcaccggaattagaagagttaagtccatgggatgttgattctagtattgattctgcggtggaccggctcgggaagcttctgacgg 312  Q
    ||||| ||||| | |||||||||||  ||||| | || || ||||||| |||||||||   ||  ||| |||||||| |||||| || ||||| |||| |    
T  14420 gattcagttccaagttcaccggaatcggaagactcaaatcaatgggattttgattctaaattttgttccgcggtggatcggctccggcagcttgtgactg 14321  T
Q  313 ttgaaaagccggtgagttggtcggaatcagatagttggattagtgttaggtgaaatt 369  Q
     | ||  |||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  14320 atcaagggccgatgagttggtcgagatcagatagttggattagtgttaggtgaaatt 14264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 716 - 1069
Alignment:
Q  13 gagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaagagatggacggctga 112  Q
    |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  716 gagaagaatcgccggtgatacccgaagaattgtcaaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaaaagatggacggctga 815  T
Q  113 gatgcttttgaatcatccttttgttgaagaagtgaagaatgttgatgagtcgtcaccaagaaatcactttgatttcaatgattgggtttctagtgagact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  816 gatgcttttgaatcatccttttgttgaagaagtgaagaatgttaatgaatcatcaccaagaaatcactttgatttcaatgattgggtttctagtgcgact 915  T
Q  213 gattcggttccgaattcaccggaattagaagagttaagtccatgggatgttgattctagtattgattctgcggtggaccggctcgggaagcttctgacgg 312  Q
    |||||||||||||||||||||||||  ||||| | ||||||||||||| ||||||| |   ||   || |||| |||||||||| || ||||| |||| |    
T  916 gattcggttccgaattcaccggaatcggaagaatcaagtccatgggattttgattccaaattttgctccgcggcggaccggctctggcagcttgtgactg 1015  T
Q  313 ttgaaaagccggtgagttggtcggaatcagatagttggattagtgttaggtgaa 366  Q
     ||||  || |||||||| |||||||| ||||||||||||||||||||| ||||    
T  1016 atgaacggctggtgagttcgtcggaattagatagttggattagtgttagatgaa 1069  T

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