View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_34 (Length: 349)
Name: NF16703_low_34
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 139 - 325
Target Start/End: Original strand, 33887637 - 33887829
Alignment:
| Q |
139 |
agagtcaagctcactgagatactacctat-tttgaaagaaaggtagaacaactaatgctaaaaacaattgacaatcctttagaagacacagtttaactct |
237 |
Q |
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| T |
33887637 |
agagtcaagctcactgagatactacctatatttgaaagaaaggtagaataattggtgctaaaaacaatcgacaatcctttagaagacacagttttactct |
33887736 |
T |
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| Q |
238 |
caccacagttttaaacttctaaaggaatggtttctaacttaggtggtatctcatctct-----tcaactcaactcataaaaacaattctacaa |
325 |
Q |
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| T |
33887737 |
caccacagttttaaacttctaaatgaatggtttctaacttagatggtatctcatcacttcaactcaactcaactcataaaaacaattctacaa |
33887829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 139 - 325
Target Start/End: Complemental strand, 33956613 - 33956421
Alignment:
| Q |
139 |
agagtcaagctcactgagatactacctat-tttgaaagaaaggtagaacaactaatgctaaaaacaattgacaatcctttagaagacacagtttaactct |
237 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
33956613 |
agagtcaagctcactgagatactacctatatttgaaagaaaggtagaataattggtgctaaaaacaatcgacaatcctttagaagacacagttttactct |
33956514 |
T |
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| Q |
238 |
caccacagttttaaacttctaaaggaatggtttctaacttaggtggtatctcatctcttcaactcaa-----ctcataaaaacaattctacaa |
325 |
Q |
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| T |
33956513 |
caccacagttttaaacttctaaatgaatggtttctaacttagatggtatctcatcacttcaactcaactcaactcataaaaacaattctacaa |
33956421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 33885305 - 33885369
Alignment:
| Q |
15 |
actgatgggttcacctaatgcaatgttgcttgcacactgttattgccagaactaggttggagatg |
79 |
Q |
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| T |
33885305 |
actgatgggttcacctaatgcaatgttgcttgcagactgttattgccagaactaggttggagatg |
33885369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 33958947 - 33958883
Alignment:
| Q |
15 |
actgatgggttcacctaatgcaatgttgcttgcacactgttattgccagaactaggttggagatg |
79 |
Q |
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| T |
33958947 |
actgatgggttcacctaatgcaatgttgcttgcagactgttattgccagaactaggttggagatg |
33958883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 52150 - 52232
Alignment:
| Q |
17 |
tgatgggttcacctaatgcaatgttgcttgcacactgttattgccagaactaggttggagatggtttcttgcattatcttccct |
100 |
Q |
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| T |
52150 |
tgatgggttcacccaatgcaatgttccttgcagattgtga-tgccaagactgggttggagatggcttcttgcactatcttccct |
52232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 52469 - 52510
Alignment:
| Q |
256 |
ctaaaggaatggtttctaacttaggtggtatctcatctcttc |
297 |
Q |
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| T |
52469 |
ctaaaggaatgatttctaatttaggtggtatctcatcacttc |
52510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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