View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_35 (Length: 341)
Name: NF16703_low_35
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 22667134 - 22666834
Alignment:
| Q |
1 |
aacgctgtcaaagactttgatggttcgtatttatatttaatcatatctatatggtttctttgcgagtatttgaaatacatttacaatcacatttaattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22667134 |
aacgctgtcaaagactttgatggttcgtatttatatttaatcatatctatatggtttctttgcgggtatttgaaatacatttacaatcacatttaattgt |
22667035 |
T |
|
| Q |
101 |
gtgagttatagtcactagattactagactnnnnnnnnnnnnnnncacttagaaagagtgccattaacatactaaatcacatgggtttaaaataactaatc |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22667034 |
gtgagttatagtcactagattactagactaaaaaaaaaaaaa--cacttagaaagagtgccattaacatactaaatcacatgggtttaaaataactaatc |
22666937 |
T |
|
| Q |
201 |
agccaaaagatgcagaataaactagcttttgtatgcactacaattaatagaaggaaaaattataattatgttcatgacttggtccaaaaatgtacatgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22666936 |
agccaaaagatgcagaataaactagcttttgtatgcactacaattaatagaaggaaaaattataattatgttcatgacttggtccaaaaatgtacatgta |
22666837 |
T |
|
| Q |
301 |
agc |
303 |
Q |
| |
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||| |
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|
| T |
22666836 |
agc |
22666834 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 41865070 - 41865034
Alignment:
| Q |
88 |
cacatttaattgtgtgagttatagtcactagattact |
124 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |
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| T |
41865070 |
cacatttaattgtgtgagttatagccactagactact |
41865034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 16975158 - 16975194
Alignment:
| Q |
92 |
tttaattgtgtgagttatagtcactagattactagac |
128 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||| |
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| T |
16975158 |
tttaattgtgtgagttctagccactagattactagac |
16975194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 11333746 - 11333786
Alignment:
| Q |
88 |
cacatttaattgtgtgagttatagtcactagattactagac |
128 |
Q |
| |
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|||||||||||||||||| | ||||||||||| |||||||| |
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| T |
11333746 |
cacatttaattgtgtgagctctagtcactagactactagac |
11333786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 11491767 - 11491807
Alignment:
| Q |
88 |
cacatttaattgtgtgagttatagtcactagattactagac |
128 |
Q |
| |
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|||||||||||||||||| | ||||||||||| |||||||| |
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|
| T |
11491767 |
cacatttaattgtgtgagctctagtcactagactactagac |
11491807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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