View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_36 (Length: 320)
Name: NF16703_low_36
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 49206334 - 49206040
Alignment:
| Q |
13 |
tggacatcatccctctcaccgctattgccgtgccgctgctcaaccatcatctctgcaattctcctctgtctgatttttatcatcctaaccgctaaatttt |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206334 |
tggacaccatccctctcaccgctattgccgtgccgctgctcaaccatcatcactgcaattctcctctgtctgatttttatcatcctaaccgctaaatttt |
49206235 |
T |
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| Q |
113 |
atattattgataatttaaatagaagacgactctttgaaaaatttacgtttttattttattttatcaggagtccatttgacagtcctgattttaatatatg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49206234 |
atattattgataatttaaatagaagacgactctttgaaaaatttacgtttttattttattttatcaggagtccatttgacagtcttgattttaatatatg |
49206135 |
T |
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| Q |
213 |
atatattcaatccgctt----nnnnnnnngactacttttagtcttttacaaacaatacacgatgtgtcatatatatggtacactaatacaccatg |
303 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206134 |
atatattcaatccgcttaaaaaaaaaaaagactacttttagtcttttacaaacaatacacgatgtgtcatatatatggtacactaatacaccatg |
49206040 |
T |
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