View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_39 (Length: 302)
Name: NF16703_low_39
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_39 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 49206923 - 49206620
Alignment:
| Q |
2 |
tgggggaataactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatg |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206923 |
tgggggaataactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatg |
49206824 |
T |
|
| Q |
102 |
ttgcctccggcttggatgggatctttacctgacaaaaactcttaatttggagatgcaagtattaggtttacaatagcagtaccttttattgtgtgatatg |
201 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206823 |
tttcctccggcttggatgggatctttacctgacaaaaactcttaatttggagatgcaagtattaggtttacaatagcagtaccttttattgtgtgatatg |
49206724 |
T |
|
| Q |
202 |
tgttttattcaccagtcttttattagttttaggttcaaact---actatgtcatatgatgatttagtttacatttttacatgcttggtattttttgaatg |
298 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206723 |
tgttttattcaccagtcttttattagttttaggttcaaactactactatgtcatatgatgatttagtttacatttttacatgcttggtattttttgaatg |
49206624 |
T |
|
| Q |
299 |
gaat |
302 |
Q |
| |
|
|||| |
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|
| T |
49206623 |
gaat |
49206620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 49201959 - 49201669
Alignment:
| Q |
11 |
aactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49201959 |
aactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccacctctgtttaagactgtccatgagcaaacgggcatgttgcctcct |
49201860 |
T |
|
| Q |
111 |
gcttggatgggatctttacctgacaaaaactcttaatttgga------gatgcaagtattaggtttacaatagcagtaccttttattgtgtgat--atgt |
202 |
Q |
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|||||||||||| | ||| |||| |||| | ||||||| ||| |||||||||||||||||| | || |||||||||||||||||||| |||| |
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| T |
49201859 |
gcttggatgggagccttatctgagaaaagcccttaattaggatgatgcaatgcaagtattaggtttatatcagtagtaccttttattgtgtgattgatgt |
49201760 |
T |
|
| Q |
203 |
gttttattcaccagtcttttattagttttaggttcaaactactatgtcatatgatgatttagtttacatttttacatgcttggtatttttt |
293 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
49201759 |
gtttgattcaccagtcttttattagttttaggttcaaactattatgttatatgacaatttaatttacatttttacatgcatggtatttttt |
49201669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 49186988 - 49186818
Alignment:
| Q |
2 |
tgggggaataactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatg |
101 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
49186988 |
tgggggaataactgatggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccacctctgtttaagactgtccatgagcaaacgggcatg |
49186889 |
T |
|
| Q |
102 |
ttgcctccggcttggatgggatctttacctgacaaaaactcttaatttgga-gatgcaagtattaggttta |
171 |
Q |
| |
|
|||||||| |||||||||||| | ||| |||| |||| ||||| ||| ||| |||||||||||| |||||| |
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| T |
49186888 |
ttgcctcctgcttggatgggagccttatctgagaaaagctcttgattaggatgatgcaagtatttggttta |
49186818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 49211481 - 49211313
Alignment:
| Q |
30 |
atgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttac |
129 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
49211481 |
atgaaagaagttgctggtgtgtacaagatgttgccacctctgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggatccttat |
49211382 |
T |
|
| Q |
130 |
ctgacaaa-------aactcttaatttggagatgcaagtattaggtttacaatagcagtaccttttatt |
191 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||||||||| ||| |||| |||||||| |
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| T |
49211381 |
ctgacaaaagctcttaagtcttaattaggagatgcaagtattaggtttacagtagtagtatcttttatt |
49211313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 49190663 - 49190552
Alignment:
| Q |
30 |
atgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttac |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| || ||||| || || |||||||||||| || | |
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| T |
49190663 |
atgaaagaagttgctggtgtctacaagatgttgccacctttgtttaagactgttcatgagcaaacgggaatgttaccacctgcttggatgggagtcttgc |
49190564 |
T |
|
| Q |
130 |
ctgacaaaaact |
141 |
Q |
| |
|
|||||||||||| |
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| T |
49190563 |
ctgacaaaaact |
49190552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 49190417 - 49190375
Alignment:
| Q |
260 |
tttagtttacatttttacatgcttggtattttttgaatggaat |
302 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
49190417 |
tttaatttacacttttacatgcttggtattttatgaatggaat |
49190375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 32593598 - 32593784
Alignment:
| Q |
6 |
ggaataactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgc |
105 |
Q |
| |
|
|||||||| |||||| | ||||| |||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32593598 |
ggaataacggaaggttctatgggcatgaaagaggttgctggtgtttacaagatgctgccacctctgtttaagactgtccatgagcaaacaggcatgttgc |
32593697 |
T |
|
| Q |
106 |
ctccggcttggatgggatctttacctgacaaaaactcttaatttgga-gatgcaagtattaggtttacaatagcagtaccttttatt |
191 |
Q |
| |
|
|||| |||||||||||| | ||| | ||||||| ||||||||| ||| ||||||||||||||||||| | ||| | ||||||||||| |
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|
| T |
32593698 |
ctcctgcttggatgggaaccttatccgacaaaagctcttaattaggaggatgcaagtattaggtttatagtagtaataccttttatt |
32593784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 31526791 - 31526634
Alignment:
| Q |
15 |
gaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggctt |
114 |
Q |
| |
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|||||| | |||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31526791 |
gaaggttctatgggtatgaaagaggttgctggtgtttacaagatgttgccacctttgtttaagactgtccatgagcaaacaggcatgttgcctcctgctt |
31526692 |
T |
|
| Q |
115 |
ggatgggatctttacctgacaaaaactcttaatttgga-gatgcaagtattaggttta |
171 |
Q |
| |
|
|||| ||| | ||| | ||||||| ||||||||| ||| ||||||||||||||||||| |
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|
| T |
31526691 |
ggataggaaccttatcagacaaaagctcttaattaggaggatgcaagtattaggttta |
31526634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 51823681 - 51823495
Alignment:
| Q |
6 |
ggaataactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgc |
105 |
Q |
| |
|
|||||| | |||||| | |||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
51823681 |
ggaatagccgaaggttctatgggtatgaaagaggttgctggtgtctacaagatgctgccacctctgttcaagactgtccatgagcaaacaggcatgttgc |
51823582 |
T |
|
| Q |
106 |
ctccggcttggatgggatctttacctgacaaaaactcttaatttgga-gatgc---aagtattaggtttacaatagcagtaccttttatt |
191 |
Q |
| |
|
|||| |||||||||||| | ||| | ||||||| ||||||||| ||| ||||| ||||||||||||| |||| ||||||||||||| |
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|
| T |
51823581 |
ctcctgcttggatgggaaccttatccgacaaaagctcttaattaggaggatgcaagaagtattaggttt---atagtagtaccttttatt |
51823495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 37030133 - 37030012
Alignment:
| Q |
27 |
ggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||| || || |||||||||||| | |
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| T |
37030133 |
ggtatgaaagaagttgctggtgtctacaagatgttgccacctttgtttaagactgtccatgagcaaacgggaatgttaccacctgcttggatgggagtct |
37030034 |
T |
|
| Q |
127 |
tacctgacaaaaactcttaatt |
148 |
Q |
| |
|
| |||||||||||||||||||| |
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| T |
37030033 |
tgcctgacaaaaactcttaatt |
37030012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 37029918 - 37029842
Alignment:
| Q |
217 |
tcttttattagttttaggttcaaactactatgtcatatgatgatttagtttacatttttacatgcttggtatttttt |
293 |
Q |
| |
|
||||||||||||||| |||| ||||| ||| ||||||||||||||| |||||||||||| |||||| | |||||| |
|
|
| T |
37029918 |
tcttttattagttttgggtttaaactcttatatcatatgatgatttaatttacatttttagttgcttgttttttttt |
37029842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 32594037 - 32594080
Alignment:
| Q |
259 |
atttagtttacatttttacatgcttggtattttttgaatggaat |
302 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
32594037 |
atttaatttacaattttacatgcttggtattttatgaatggaat |
32594080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 26755960 - 26755869
Alignment:
| Q |
11 |
aactgaaggtgccatgggtatgaaagaagttgctggtgtctacaagatgttgccgcctctgtttaagactgtccatgagcaaacaggcatgt |
102 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
26755960 |
aactgacggtggcataggtatgaaagaagttgctggtgtgtacaagatgttgccacctctgtttaagacagtccatgagcaaacaggcatgt |
26755869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 52267390 - 52267516
Alignment:
| Q |
70 |
tgtttaagactgtccatgagcaaacaggcatgttgcctccggcttggatgggatctttacctgacaaaaactcttaatttggag-----atgcaagtatt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||||||| ||||||||| |||| | ||||||||| |
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|
| T |
52267390 |
tgtttaagactgtccatgagcaaacaggcatgttgcctcctgcttggatgggaaccttatccgacaaaagctcttaattaggaggatgcaagcaagtatt |
52267489 |
T |
|
| Q |
165 |
aggtttacaatagcagtaccttttatt |
191 |
Q |
| |
|
||||||| | ||| ||||||||||||| |
|
|
| T |
52267490 |
aggtttatagtagtagtaccttttatt |
52267516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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