View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_42 (Length: 286)
Name: NF16703_low_42
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 49206311 - 49206585
Alignment:
| Q |
1 |
tagcggtgagagggatgatgtccaggagaggaaaaaagttgaagggatggatggtgtcaaaggacgtagtagaagcgaaaagcatgatttgatttcaatt |
100 |
Q |
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| T |
49206311 |
tagcggtgagagggatggtgtccaggagaggaaaaaagttgaagggatggatggtgtcaaaggacgtagtagaagcgaaaagcatgatttgatttcaatt |
49206410 |
T |
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| Q |
101 |
tattttgttgttggtggtggatgtgggttaggttagaactatcatgattttaacaagtgattggagctaccaagctaccatataaccaaaattttgaggc |
200 |
Q |
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| T |
49206411 |
tattttgttgttggtggtggatgtgggttaggttagaactatcatgattttaacaagtgattggagctaccaagctaccatataaccaaaattttgaggc |
49206510 |
T |
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| Q |
201 |
cctgtaaattggtaaagaactcgttatttcatgacttacgcataccgacaaaaagaataaccacgatgtgatgat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
49206511 |
cctgtaaattggtaaagaactcgttatttcatgacttacgcataccgacaacaaaaataaccacgatgtgatgat |
49206585 |
T |
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