View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_44 (Length: 279)
Name: NF16703_low_44
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 39689192 - 39688998
Alignment:
| Q |
1 |
cctatctcattcagtattaattcttctgtatatctttgcattttgatttatataaagcttatgcaaatatgtctacatatttatatacttggtat---tc |
97 |
Q |
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| T |
39689192 |
cctatctcattcagtattaattcttctgtatatctttgcattttgatttatataaagcttatgcaaatatgtctacatatttatatacttggtattgatc |
39689093 |
T |
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| Q |
98 |
acttgttggatgagattaaattaattaaactaatatattcttttgtggcgtaaagttggaatgattcattagcatgcttgagtggcagtatatttttaa |
196 |
Q |
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| T |
39689092 |
acttgttggatgagatta----aattaaactaatatattcttgtgtggcgtaaagttggaatgattcattagcatgcttgagtggtagtatatttttaa |
39688998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 39683659 - 39683512
Alignment:
| Q |
82 |
tatatacttggtattcacttgttggatgagattaaattaattaaactaatatattcttttgtggcgtaaagttggaatgattcattagcatgcttgagtg |
181 |
Q |
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| T |
39683659 |
tatatacttgctattcacttgttggatgaaattaaattaa----actaatctgttcttttgtggcgtgaagttggaatcattcattagcatgcttgagtg |
39683564 |
T |
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| Q |
182 |
gcagtatatttttaataagtataatgtccataggtgatgaaggaaaggagtgtg |
235 |
Q |
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| T |
39683563 |
g--ttttattttcagtaagcacaatgcccatatgtgatgaaggaaaggagtgtg |
39683512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 39688814 - 39688735
Alignment:
| Q |
188 |
tatttttaataagtataatgtccataggtgatgaaggaaaggagtgtgcttttctattaccattatttaatatagttcat |
267 |
Q |
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| T |
39688814 |
tatttttaataaccatgatgtccataggtgatgaaggaaaggagtgtgcttttctattaccattatttaatatagttcat |
39688735 |
T |
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