View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16703_low_46 (Length: 273)

Name: NF16703_low_46
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16703_low_46
NF16703_low_46
[»] scaffold0028 (2 HSPs)
scaffold0028 (19-256)||(110176-110418)
scaffold0028 (198-256)||(127755-127813)
[»] chr2 (6 HSPs)
chr2 (19-256)||(21189457-21189698)
chr2 (22-256)||(2590556-2590800)
chr2 (198-256)||(18739115-18739173)
chr2 (198-252)||(35969281-35969335)
chr2 (198-244)||(14433603-14433649)
chr2 (212-256)||(1043200-1043244)
[»] chr3 (3 HSPs)
chr3 (19-198)||(16366249-16366427)
chr3 (171-256)||(19930008-19930097)
chr3 (171-256)||(42253534-42253623)
[»] chr1 (6 HSPs)
chr1 (19-252)||(9111363-9111599)
chr1 (198-256)||(12141656-12141714)
chr1 (198-256)||(24981166-24981224)
chr1 (198-256)||(47580452-47580510)
chr1 (198-256)||(43254171-43254228)
chr1 (193-233)||(51465563-51465603)
[»] chr4 (7 HSPs)
chr4 (74-256)||(895498-895685)
chr4 (198-257)||(13010537-13010596)
chr4 (198-256)||(6667723-6667781)
chr4 (198-254)||(20058107-20058163)
chr4 (198-257)||(44643507-44643565)
chr4 (198-239)||(6671395-6671436)
chr4 (198-257)||(31767452-31767510)
[»] chr8 (10 HSPs)
chr8 (19-256)||(21185139-21185383)
chr8 (198-256)||(1788903-1788961)
chr8 (198-256)||(39655703-39655761)
chr8 (198-256)||(17028410-17028468)
chr8 (198-256)||(17558846-17558904)
chr8 (19-61)||(21184456-21184498)
chr8 (225-256)||(21347167-21347198)
chr8 (198-232)||(38676893-38676927)
chr8 (198-230)||(17088774-17088806)
chr8 (198-254)||(38678742-38678797)
[»] chr7 (8 HSPs)
chr7 (198-256)||(22301155-22301213)
chr7 (193-257)||(3850538-3850602)
chr7 (202-256)||(11674056-11674110)
chr7 (198-256)||(31210079-31210137)
chr7 (198-254)||(31206630-31206686)
chr7 (193-256)||(39426450-39426513)
chr7 (198-256)||(15569622-15569679)
chr7 (198-256)||(32352433-32352490)
[»] scaffold0014 (1 HSPs)
scaffold0014 (198-256)||(82677-82735)
[»] chr6 (6 HSPs)
chr6 (198-256)||(6591853-6591911)
chr6 (198-256)||(19697849-19697907)
chr6 (201-254)||(15518074-15518127)
chr6 (198-256)||(24044937-24044994)
chr6 (196-257)||(24041632-24041692)
chr6 (198-250)||(19973730-19973781)
[»] chr5 (5 HSPs)
chr5 (198-251)||(18594875-18594928)
chr5 (200-256)||(26703023-26703079)
chr5 (200-256)||(26972756-26972812)
chr5 (109-256)||(13292009-13292160)
chr5 (202-254)||(39292156-39292208)
[»] scaffold0076 (1 HSPs)
scaffold0076 (198-254)||(6764-6820)


Alignment Details
Target: scaffold0028 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 110418 - 110176
Alignment:
Q  19 gaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggta 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||     
T  110418 gaattatctcaaaataaaaatcagcataaacatataagcattaaaatcaataagcaaaagaaagagatcgttagacttatctatctttaaaattgcggtg 110319  T
Q  119 atttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgttatcta-----aggcgtgacatagtca 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||     ||||||||||||||||    
T  110318 atttgaggctggtaatgaagagcaaacaaacaccaaaccttgaatagcaataacctgcaaaatagtaatctgttatctaacatgaggcgtgacatagtca 110219  T
Q  214 ctgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||| ||||||||||||||||||| | ||||||||||    
T  110218 ctgtccttgaggattttatccgcctcataaacgcatatcctcc 110176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 127813 - 127755
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||    
T  127813 aggcgtgacatagtcactgtccttgaggattttatccgcctcagaaacgcatatcctcc 127755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 21189698 - 21189457
Alignment:
Q  19 gaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||     
T  21189698 gaattatctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaagagaga--tcattagacttatctatctttaaaattgcggtg 21189601  T
Q  119 atttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-atctaa-----ggcgtgacatagtc 212  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||     ||||||||||||||    
T  21189600 atttgaggctggtaaagaagagcaaacaaacgccaaaccatgaatagcaataacctgcaaaatagtaaactgtttatctaacctgaggcgtgacatagtc 21189501  T
Q  213 actgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  21189500 actgtccttgaggattttatccgcctcataagcgcatatcctcc 21189457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 256
Target Start/End: Complemental strand, 2590800 - 2590556
Alignment:
Q  22 ttatctcaaaataacaatcagcataaacatataagcatt------agaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcg 115  Q
    ||||||| |||||| ||| ||||||||||||||||||||      | || |||||| ||||||||||||||||||||||||||||  ||||||| |||||    
T  2590800 ttatctctaaataataatgagcataaacatataagcatttaaaaaaaaaacaataaacaaaagagagagatcattagacttatctg-ctttaaa-ttgcg 2590703  T
Q  116 gtaatttgaggctggtaatgaaga-gcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-----atctaaggcgtgacata 209  Q
    || | |||| || |||||||  || | |||||||||  ||  ||||||  |  || |||||||| || |||||| |||     | || ||||||||||||    
T  2590702 gtgacttgaagccggtaatggtgaagtaaacaaacaagaagtcatgaacggagatgacctgcaacatggtaaaccgttcaataacctgaggcgtgacata 2590603  T
Q  210 gtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  2590602 gtcactgtccttgaggattttattcgcctcataagcgcatatcctcc 2590556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 18739115 - 18739173
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  18739115 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 18739173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 35969281 - 35969335
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatc 252  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  35969281 aggcgtgacatagtcactgtccttgaagattttatccgcctcaaaagcgcatatc 35969335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 14433603 - 14433649
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataag 244  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
T  14433603 aggcgtgacatagtcactgtccttgtggattttatccgcctcataag 14433649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 1043244 - 1043200
Alignment:
Q  212 cactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||| ||||||||||| |||||| || ||||||||||    
T  1043244 cactgtccttgaggattttatccgtctcataggcgcatatcctcc 1043200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 16366249 - 16366427
Alignment:
Q  19 gaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  16366249 gaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaa-agagagatcattagacttatctatctttaaaattgcggtg 16366347  T
Q  119 atttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgttatctaa 198  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16366348 atttgaggctggtaatgaagagcaaacaaacatcaaaccatgaatagcaataacctgcaaaatagtaaactgttatctaa 16366427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 19930008 - 19930097
Alignment:
Q  171 acctgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||| ||||| ||     |||||||||| |||||| |||||| | || |||||||||||||||||| ||||||||||    
T  19930008 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcaccgtccttaagga-tttatccgcctcataagcgcatatcctcc 19930097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 42253534 - 42253623
Alignment:
Q  171 acctgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||| ||||| ||     |||||||||| ||||||||||||| | || |||| ||||||||||||| ||||||||||    
T  42253534 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcactgtccttaagga-tttacccgcctcataagcgcatatcctcc 42253623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 9111363 - 9111599
Alignment:
Q  19 gaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggta 118  Q
    ||||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||     
T  9111363 gaattatctcaaaataacaataagtataaacatataaacattaaaatcaataagcaaaagag--agatcattagacttatctatctttaaaattgcggtg 9111460  T
Q  119 atttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-----atctaaggcgtgacatagtca 213  Q
    |||||||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||     |||| ||||||||||||||||    
T  9111461 atttgaggctcgtaatgaagagcaaacaaacatcactccatgaatagcaataacctgcaaaatagtaaactgttatataatctgaggcgtgacatagtca 9111560  T
Q  214 ctgtccttgacgattttatccgcctcataagcacatatc 252  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  9111561 ctgtccttgaggattttatccgcctcataagcgcatatc 9111599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 12141656 - 12141714
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  12141656 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 12141714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 24981166 - 24981224
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  24981166 aggcgtgacatagtcagcgtccttgaggattttatccgcctcataagcacatatcctcc 24981224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 47580510 - 47580452
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||  |||||||||    
T  47580510 aggcgtgacatagtcaatgtccttgaagattttatctgcctcataagcgaatatcctcc 47580452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 43254228 - 43254171
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||| ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  43254228 aggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 43254171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 51465603 - 51465563
Alignment:
Q  193 atctaaggcgtgacatagtcactgtccttgacgattttatc 233  Q
    |||| |||||||||||||||||||||||||  |||||||||    
T  51465603 atctgaggcgtgacatagtcactgtccttggagattttatc 51465563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 74 - 256
Target Start/End: Complemental strand, 895685 - 895498
Alignment:
Q  74 aaaagagagagatcattagacttatctatctttaaaattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacc 173  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  895685 aaaagagagagatcattagacttatctatctttaaaattgcggtgatttgaggctggtaatgaagaacaaacaaacaccaaaccatgaatagcaataacc 895586  T
Q  174 tgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    ||||||||||||||||||||||||     || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  895585 tgcaaaatagtaaactgttatctaacctgagtcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 895498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 13010537 - 13010596
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 257  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  13010537 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcct 13010596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 6667723 - 6667781
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  6667723 aggcgtgacatagtcactgttcttgaggattttatccgcctcataagcgcatatcctcc 6667781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 20058107 - 20058163
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 254  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||    
T  20058107 aggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcgtatcct 20058163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 44643565 - 44643507
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 257  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||    
T  44643565 aggcgtgacatagtcactgtccttca-gattctatccgcctcataagcgcatatcctcct 44643507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 6671395 - 6671436
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctc 239  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  6671395 aggcgtgacatagtcaccgtccttgaggattttatccgcctc 6671436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 31767452 - 31767510
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 257  Q
    |||||||||| | ||||| ||||| | ||||| |||||||||||||||||||||||||||    
T  31767452 aggcgtgacaaaatcactatccttaaggattt-atccgcctcataagcacatatcctcct 31767510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 21185139 - 21185383
Alignment:
Q  19 gaattatctcaaaataacaatcagcataaacatataagcattag-aatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcggt 117  Q
    ||||| |||| |||||| |||||||||||||||||||||||||  || |||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  21185139 gaattctctctaaataataatcagcataaacatataagcattaataaacaataagcaaaatagagagatcattagacttatctatctttaaaattgtggt 21185238  T
Q  118 aatttgaggctggtaatgaag-agcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-----atctaaggcgtgacatagt 211  Q
     | |||| ||   |||||  | || |||||||||  ||  ||||||  |  || |||||||| || |||||| |||     | || | ||||||||||||    
T  21185239 gacttgaagccattaatggtgaagtaaacaaacaagaagtcatgaacggagatgacctgcaacatggtaaaccgttcaataacctgaagcgtgacatagt 21185338  T
Q  212 cactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  21185339 cactgtccttgaggattttatccgcctcataagcgcatatcctcc 21185383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 1788903 - 1788961
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  1788903 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 1788961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 39655703 - 39655761
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  39655703 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcc 39655761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 17028468 - 17028410
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  17028468 aggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatcctcc 17028410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 17558904 - 17558846
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  17558904 aggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatcctcc 17558846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 21184456 - 21184498
Alignment:
Q  19 gaattatctcaaaataacaatcagcataaacatataagcatta 61  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  21184456 gaattatctctaaataataatcagcataaacatataagcatta 21184498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 21347198 - 21347167
Alignment:
Q  225 gattttatccgcctcataagcacatatcctcc 256  Q
    ||||||||||||||||||||||||||||||||    
T  21347198 gattttatccgcctcataagcacatatcctcc 21347167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 38676927 - 38676893
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttat 232  Q
    |||||||||||||||||||||||||| ||||||||    
T  38676927 aggcgtgacatagtcactgtccttgaggattttat 38676893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 17088774 - 17088806
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgatttt 230  Q
    |||||||||||||||||||||||||| ||||||    
T  17088774 aggcgtgacatagtcactgtccttgaggatttt 17088806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 38678797 - 38678742
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 254  Q
    |||||||||||||||| |||| |||| ||||| ||||| ||||||||| ||||||||    
T  38678797 aggcgtgacatagtca-tgtctttgaggatttgatccgtctcataagcgcatatcct 38678742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 22301155 - 22301213
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  22301155 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 22301213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 3850538 - 3850602
Alignment:
Q  193 atctaaggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 257  Q
    |||| |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||    
T  3850538 atctgaggcgtgacatagtcactgtccttgatgattttatacgcctcataagcgcatatcctcct 3850602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 11674110 - 11674056
Alignment:
Q  202 gtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  11674110 gtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 11674056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 31210079 - 31210137
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  31210079 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcc 31210137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 31206630 - 31206686
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 254  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||    
T  31206630 aggcgtgacatagtcactgtctttgaggattttatccacctcataagcgcatatcct 31206686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 39426450 - 39426513
Alignment:
Q  193 atctaaggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| |||||||||  |||||||||    
T  39426450 atctgaggcgtgatatagtcactgtccttgaggattttatccgtctcataagcgaatatcctcc 39426513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 15569679 - 15569622
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||| |||||||||||||   ||||| ||||||||||||||||||||||||||    
T  15569679 aggcgtgacaaagtcactgtccttagggattt-atccgcctcataagcacatatcctcc 15569622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 32352433 - 32352490
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||| ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  32352433 aggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 32352490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 82735 - 82677
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  82735 aggcgtgacatagtcactatccttgaggattttatccgcctcataagcgcatatcctcc 82677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 6591853 - 6591911
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  6591853 aggcgtgacgtagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 6591911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 19697849 - 19697907
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  19697849 aggcgtgacatagtcattgtccttgaggattttatccgcctcataagcgcatatcctcc 19697907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 15518127 - 15518074
Alignment:
Q  201 cgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 254  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||    
T  15518127 cgtgacatagtcactttccttgaggattatatccgcctcataagcgcatatcct 15518074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 24044937 - 24044994
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||||||||| ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  24044937 aggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 24044994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 24041632 - 24041692
Alignment:
Q  196 taaggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 257  Q
    |||||||||||| |||||||||| || | || ||||| |||||||||||| |||||||||||    
T  24041632 taaggcgtgacaaagtcactgtctttaa-gaatttattcgcctcataagcgcatatcctcct 24041692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 19973781 - 19973730
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacata 250  Q
    |||||||||| ||||||||||||| | || |||||||||||||||||| ||||    
T  19973781 aggcgtgacaaagtcactgtccttaaaga-tttatccgcctcataagcgcata 19973730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 18594928 - 18594875
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatat 251  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  18594928 aggcgtgacattgtcactgtccttgaagattttatccgcctcataagcgcatat 18594875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 26703023 - 26703079
Alignment:
Q  200 gcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  26703023 gcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcc 26703079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 26972756 - 26972812
Alignment:
Q  200 gcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  26972756 gcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcc 26972812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 13292160 - 13292009
Alignment:
Q  109 aattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgttat-----ctaaggcgt 203  Q
    ||||||||| ||||||||  ||||||||||||||||||| ||  ||||| ||||  || || |||| |||||||||||| || |||     || |||| |    
T  13292160 aattgcggtgatttgaggtcggtaatgaagagcaaacaaccatgaaaccgtgaacggcgatgacctacaaaatagtaaattgctatctgacctgaggcat 13292061  T
Q  204 gacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 256  Q
    |||  ||| ||||||||| | || |||||||||||||||||| ||||||||||    
T  13292060 gacgaagttactgtccttaaaga-tttatccgcctcataagcgcatatcctcc 13292009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 39292208 - 39292156
Alignment:
Q  202 gtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 254  Q
    |||| ||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  39292208 gtgatatagtcactgtccttaaggattttatccgcctcataagcgcatatcct 39292156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 6764 - 6820
Alignment:
Q  198 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 254  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||    
T  6764 aggcgtgacatagtcactgtcattgaggattttatccgcctcataagtgcatatcct 6820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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