View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_49 (Length: 251)
Name: NF16703_low_49
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31108615 - 31108856
Alignment:
| Q |
1 |
tcttaagaagacaataattagtaagaatagtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaac |
100 |
Q |
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| T |
31108615 |
tcttaagaagacaataattagtaagaatagtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaac |
31108714 |
T |
|
| Q |
101 |
agaaaactcaataatgaaagaaaaaagttgatttattccataagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaa |
200 |
Q |
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| T |
31108715 |
agaaaactcaataatgaaagaaaaaagttgatttattccttaagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaa |
31108814 |
T |
|
| Q |
201 |
ccaacacctctgctaattaacaccatcaactgtaatagtata |
242 |
Q |
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| T |
31108815 |
ccaacacctctgctaattaacaccatcaactgtaataatata |
31108856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 242
Target Start/End: Original strand, 38898538 - 38898753
Alignment:
| Q |
29 |
agtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacagaaaactcaataatgaaaga--aaaaa |
126 |
Q |
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| T |
38898538 |
agtaacatctttgttccatttaaaccgagtattgtagcatttttcttatatgtaataataacaattcttaatagaaaattcaataatgaaagagaaaaaa |
38898637 |
T |
|
| Q |
127 |
gttgatttattccataagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaaccaacacctctgctaattaacaccat |
226 |
Q |
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| T |
38898638 |
gtcaatttattccataagattgatcaatgattacaactcttttcaaacagttctttctaaataacacaaagaattctacacctctgctaattaacaccag |
38898737 |
T |
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| Q |
227 |
caactgtaatagtata |
242 |
Q |
| |
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||||||||||| |||| |
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| T |
38898738 |
caactgtaataatata |
38898753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 31103047 - 31103260
Alignment:
| Q |
29 |
agtaacaactctgttccatttaaactgagtattgtagcatttttcttctatgtgatgataacacctcttaacagaaaactcaataatgaa--agaaaaaa |
126 |
Q |
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|||||||||||| | |||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |||||| ||||||||||| |||||||| |
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| T |
31103047 |
agtaacaactctctaccatttaaactgagtattgtagcaattttcttgtatgtgacaataacaattcttaatagaaaaatcaataatgaaagagaaaaaa |
31103146 |
T |
|
| Q |
127 |
gttgatttattccataagattgatcaatgatcaaaactcttttgaaacagttctttctaaataacacaaataaaccaacacctctgctaattaacaccat |
226 |
Q |
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|| ||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||| || ||||||||||||||||||||||||| |
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| T |
31103147 |
gtcaatttattccataagattgatcaatgattacaactcttttcaaacagttct-------taacacaaagaattcaacacctctgctaattaacaccat |
31103239 |
T |
|
| Q |
227 |
caactgtaatagtataatcta |
247 |
Q |
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||||||||||| |||| |||| |
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| T |
31103240 |
caactgtaataatatattcta |
31103260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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