View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_5 (Length: 664)
Name: NF16703_low_5
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Original strand, 52095262 - 52095891
Alignment:
| Q |
17 |
aatattgcagcacaccaaccaatacgtacagcataatagataaaattccacaactgcatcaactaaatcaagaaggcagtgaaacagcatcatcattaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52095262 |
aatattgcagcacaccaaccaatacgtacagcataatagataaaattccacaactgcatcaactaaatcaagaaggcagtgaaacagcatcatcattaca |
52095361 |
T |
|
| Q |
117 |
gtttatccggaaacagtgaaacgaaagccatgtctccaatatcagtaaacacatcaacaaaactgcagtacatcaagaaacaatatgttgctagactcta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52095362 |
gtttatccggaaacagtgaaacgaaagccatgtctccaatatcagtaaacacatcaataaaactgcagtacatcaagaaacaatatgttgctagactcta |
52095461 |
T |
|
| Q |
217 |
tcatagaacagatgtagcctaatagtgccaccaagactaaggataatacttgttaggcttgattctagatttcaccaacaggattgctataacattttcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52095462 |
tcatagaacagatgtagcctaatagtgccaccaagactaaggataatacttgttaggcttgattctagatttcaccaacaggattgctataacattttcc |
52095561 |
T |
|
| Q |
317 |
tgattttcaatacttttttgtttgtttggggcaataaacaatgatttcacttcagccacctttatagacaaaataatgataccttcaatgcatagatgta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
52095562 |
tgattttcaatacttttttgtttgtttggggcaataaacaaggatttcacttcagccacctttatagacgaaataatgacaccttcaatgcatagatgta |
52095661 |
T |
|
| Q |
417 |
aagagaagagtccttctaaaaataaagccttgacttaccttgaaaatgggtcaatgtcaactagcacatgctgaattattactaatttgataatatctaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52095662 |
aagagaagagtccttctaaaaataaagccttgacttaccttgaaaatgggtcaatgtcaactagcacatgctgaattattactaatttgataatatctaa |
52095761 |
T |
|
| Q |
517 |
tcctgcaaattgctttcatttaccttgaaaatgtgtcgatgtacatataaaattcatttacaagttctttacctatcaagttatttgattcaaattgcaa |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52095762 |
tcctgcaaattgctttcatttaccttgaaaatgtgtcgatgtacatataaaattcatttacaagttctttacctatcaagttatttgattcaaattgcaa |
52095861 |
T |
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| Q |
617 |
atnnnnnnngtatccttgtctcctgaaaat |
646 |
Q |
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|| | ||||||||||||||||||| |
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| T |
52095862 |
ataaaaaaagcatccttgtctcctgaaaat |
52095891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 24 - 618
Target Start/End: Original strand, 36410774 - 36411371
Alignment:
| Q |
24 |
cagcacaccaaccaatacgtacagcataatagataaaattccacaactgcatcaactaaatcaagaaggcagtgaaacagcatcatcattacagtttatc |
123 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||| |||||| ||| |||||| |
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| T |
36410774 |
cagcacaccaaccaatacatacagcataatagataaaattccacaacttcatcagctaaatccagaaggcagcgaaacagcaacatcatgacattttatc |
36410873 |
T |
|
| Q |
124 |
cggaaacagtgaaacgaaagccatgtctccaatatcagtaaacacatcaacaa---aactgcagtacatcaagaaacaatatgttgctagactctatcat |
220 |
Q |
| |
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|||| ||||||||||||||||| |||| |||||||||||||||||||| ||| |||| |||| |||||||| ||||||||| |||||||||||||| |
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| T |
36410874 |
tggaagcagtgaaacgaaagccacgtcttcaatatcagtaaacacatcatcaacagaacttcagtgtatcaagaagcaatatgtttctagactctatcat |
36410973 |
T |
|
| Q |
221 |
agaacagatgtagcctaatagtgccaccaagactaaggataatacttgttaggcttgattctagatttcaccaacaggattgctataacattttcctgat |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |
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| T |
36410974 |
agaacagatgtagcctaatagtgccaccaagactaaggaaaatacttgttaggcttgattccagatttgaccaacaggattgctataacattttcctcat |
36411073 |
T |
|
| Q |
321 |
tttcaatacttttttgtttgtttggggcaataaacaatgatttcacttcagccacctttatagacaaaataatgataccttcaatgcatagatgtaaaga |
420 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |||| ||||||||| || ||||| |||||||||||||| |
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| T |
36411074 |
tttcaatacttttttgtttgtttggggcaacaaacaaggatttcacttcagccatctttacagacgaaataatgacacgttcaacccatagatgtaaaga |
36411173 |
T |
|
| Q |
421 |
gaagagtccttctaaaaataaagccttgacttaccttgaaaatgggtcaatgtcaactagcacatgctgaatta-ttactaatttgataatatctaatcc |
519 |
Q |
| |
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|||||||||| ||||||||||||| || |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| || |
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| T |
36411174 |
gaagagtcctgctaaaaataaagctttcacttaccttgaaaatgtgtcaatgtcaaccagcacatgctgaattatttactaatttgataatatctaaccc |
36411273 |
T |
|
| Q |
520 |
tgcaaattgctttcatttaccttgaaaatgtgtcgatgtacatataaaattcatttacaagttctttacctatcaagttatttgattcaaattgcaaat |
618 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| |
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| T |
36411274 |
tgcaaattgctttcatttaccttgaaaatgtgtcaatgtacatataaaattcatttacaaattctttacctatcaaatta-ttgattcaaattgcaaat |
36411371 |
T |
|
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