View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_50 (Length: 250)
Name: NF16703_low_50
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_50 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 13704086 - 13704319
Alignment:
| Q |
17 |
tggcattcttataggaaaatttgtttagtgggataatcggaagtgaaaaaggcaacttaaaaccatatattctttttgtgctccatagacatatataatg |
116 |
Q |
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| T |
13704086 |
tggcattcttataggaaaatttgtttagtggtataatcggaagtgaaaaaggcaacttaaaaccatatattctttttgtgctccatagacatatataatg |
13704185 |
T |
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| Q |
117 |
atgtcattactatttcaatcgatgatcaacaaagaagcttgcatgttaaagaatcaagaacgacatttgataaagagaaagatgatgaaccaactttgaa |
216 |
Q |
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| T |
13704186 |
atgtcattactatttcactcgatgatcagcaaagaagcttgcatgataaagaatgaagaacaaaatttgataaagagaaagatgatgaaccaactttgaa |
13704285 |
T |
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| Q |
217 |
tatgcccaactatagaaagagttacaggcgtgga |
250 |
Q |
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| T |
13704286 |
tatgcccaactatagaaagagttacaggcgtgga |
13704319 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 35695284 - 35695210
Alignment:
| Q |
13 |
aatatggcattcttataggaaaatttgtttagtgggataatcggaagtgaaaaaggcaacttaaaaccatatatt |
87 |
Q |
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| T |
35695284 |
aatatagcattcttatatgcaaatttgtttaagggtataattggaagtgaaaaagccagcccaaaaccatatatt |
35695210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 14782070 - 14782126
Alignment:
| Q |
33 |
aaatttgtttagtgggataatcggaagtgaaaaaggcaacttaaaaccatatattct |
89 |
Q |
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| T |
14782070 |
aaatttgtttaagggtataatagaaagtgaaaaaggcagcttaaaaccatgtattct |
14782126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 15232103 - 15232159
Alignment:
| Q |
33 |
aaatttgtttagtgggataatcggaagtgaaaaaggcaacttaaaaccatatattct |
89 |
Q |
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| T |
15232103 |
aaatttgtttaagggtataatagaaagtgaaaaaggcagcttaaaaccatgtattct |
15232159 |
T |
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