View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_51 (Length: 250)
Name: NF16703_low_51
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_51 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 24647810 - 24647609
Alignment:
| Q |
15 |
aactatatatttattttccactgttttaatccaactttcctttgttttaatccaacctatatcaaataaattattatttctatcataaatacgaggcaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24647810 |
aactatatatttattttccactgttttaatccaactttccattgttttaatccaacctatatcaaataaattattatttctatcataaatatgaggcaaa |
24647711 |
T |
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| Q |
115 |
ctattaaaatctattatcagaagatgacaatcgtccttgattattttatattcaaaaccactttaaacatctcaatatttgaattgaaaagtttaatagt |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24647710 |
ctattaaaatctattatcagaagataacaatcgtccttgattattttatattcaaaaccactttaaacatctcaatatttgaattgaaaagtttaatagt |
24647611 |
T |
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| Q |
215 |
at |
216 |
Q |
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|| |
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| T |
24647610 |
at |
24647609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 11580 - 11678
Alignment:
| Q |
50 |
tttcctttgttttaatccaacctatatcaaataaattattatttctatcataaatacgaggcaaactattaaaatctattatcagaagatgacaatcgt |
148 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
11580 |
tttccattgttttaatccaatctatatcaaataaattattatttcaatcataaaaatgaggcaaaatattaaaatctattatcggaagatgacaatcgt |
11678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 11737 - 11800
Alignment:
| Q |
153 |
gattattttatattcaaaaccactttaaacatctcaatatttgaattgaaaagtttaatagtat |
216 |
Q |
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| T |
11737 |
gattattttatattcaaaaccactttaaacatctcaatatttgaattgaaaagtttaatagtat |
11800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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