View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_52 (Length: 244)
Name: NF16703_low_52
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 5461400 - 5461581
Alignment:
| Q |
1 |
atagaaagtaataaatgtacaattaatgatgttatgtgaataatcagtaatggctgacattgctaaccaagtgtaacatgtctaattctactaggtccag |
100 |
Q |
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| T |
5461400 |
atagaaagtaataaatgtacaattaatgatgttatgtgaataatcagtaatggctgacattgctaaccaagtgtaacatgtctaattctactaggtccag |
5461499 |
T |
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| Q |
101 |
cttcatgagttccttgaactctcggctgtctgttttcggtgtgcgcggtggttgaacttgtttattttccttttgaccttta |
182 |
Q |
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| T |
5461500 |
cttcatgagttccttgaactctcggctgtctgttttcggtgtgcgcggtggttgaacttgtttattatccttttgaccttta |
5461581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 5461604 - 5461662
Alignment:
| Q |
180 |
ttatggatagttgatgttctctttgcacaacgctcattctttgtttacttttcctttca |
238 |
Q |
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| T |
5461604 |
ttatggatagttgatgttctctttgcacaacgctcattctttgtttacttttcctttca |
5461662 |
T |
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