View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_54 (Length: 236)
Name: NF16703_low_54
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 31108625 - 31108469
Alignment:
| Q |
1 |
tcttcttaagatataatttcatgaagaaagctatcctagtagtgagagactccactgtcttgaatggtttctgtattgattctaacagcaactaatttaa |
100 |
Q |
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| T |
31108625 |
tcttcttaagatataatttcatgaagaaagctatcctagtagtgagagactccactgtcttgaatggtttctgtattgattctaacagcaactaatttaa |
31108526 |
T |
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| Q |
101 |
taccaattactttaagattgtccacctcgtcacttatatatttcttaagaaaggact |
157 |
Q |
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| T |
31108525 |
taccaattactttaagattgtccacctcgtcacttatatatttcttaagaaaggact |
31108469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 31102006 - 31101903
Alignment:
| Q |
40 |
tagtgagagactccactgtcttgaatggtttctgtattgattctaacagcaactaatttaataccaattactttaagattgtccacctcgtcacttatat |
139 |
Q |
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| T |
31102006 |
tagtaagagtctccactgaattgaatggcttctgtattgattctaacagtaactaatttaataccatttactttaaggttgtcaacctcatcgcttatat |
31101907 |
T |
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| Q |
140 |
attt |
143 |
Q |
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|||| |
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| T |
31101906 |
attt |
31101903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 31096925 - 31096849
Alignment:
| Q |
40 |
tagtgagagactccactgtcttgaatggtttctgtattgattctaacagcaactaatttaataccaattactttaag |
116 |
Q |
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| T |
31096925 |
tagtgagagactccattgtcttgaatggtttctgtgttgatcctaacagtaactaatttaataccaattacgttaag |
31096849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 38898514 - 38898385
Alignment:
| Q |
11 |
atataatttcatgaagaaagctatcctagtagtgagagactccactgtcttgaatggtttctgtattgattctaacagcaactaatttaataccaattac |
110 |
Q |
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| T |
38898514 |
atataatttcatgaagaaagcaaccttagta---agaggctccattgtcttgaatggtttttgtgttgttcataacaaaaactaatttaataacaattac |
38898418 |
T |
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| Q |
111 |
tttaagattgtccacctcgtcacttatatattt |
143 |
Q |
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| T |
38898417 |
tttaaggttgtcaacctcgtaacttatatattt |
38898385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 31108469 - 31108422
Alignment:
| Q |
174 |
ttaattatttttcttgtaaaaggttgctttaggatttagaatagtttt |
221 |
Q |
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| T |
31108469 |
ttaattattttttttgtaaaaggttgctttaggattttgaatagtttt |
31108422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 31105319 - 31105252
Alignment:
| Q |
145 |
ttaagaaaggactctatcttcttataagattaattatttt--tcttgtaaaaggttgctttaggattt |
210 |
Q |
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| T |
31105319 |
ttaagaaaggattatatcttcttataagattttttattttatttttgtaaaaggttgctttaggattt |
31105252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 38898304 - 38898251
Alignment:
| Q |
90 |
aactaatttaataccaattactttaagattgtccacctcgtcacttatatattt |
143 |
Q |
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| T |
38898304 |
aactaattcaataccaattactttaaggctgtcaacctcatcacctatatattt |
38898251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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