View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_7 (Length: 645)
Name: NF16703_low_7
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 14 - 623
Target Start/End: Complemental strand, 25990025 - 25989420
Alignment:
| Q |
14 |
atagtgtcagaattctcatacaaaataaaataatgtcagagttgtcataccaaagaaataaaatagtgtcagagttcttggagtaaagtattaatctaat |
113 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||| |||||||||| |||||| ||||||||||||||||||| |
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| T |
25990025 |
atagtgtcagaattctcacacaaaataaaataatgtcagagttgtctta------aaaaaaagtagtgtcagaattcttgcagtaaagtattaatctaat |
25989932 |
T |
|
| Q |
114 |
catctaaaccac-tgttaacaaaatctatggactatgatagacaaaataaatattctcacatctagttaaggtatcttacannnnnnnn-gagcaaattt |
211 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25989931 |
catccaaaccacctgttaacaaaatctatggactatgatagacaaaataaatattctcacatctagttaaggtatcttacatttttttttgagcaaattt |
25989832 |
T |
|
| Q |
212 |
ttaaggtatcttacatagtacaaaagataaaaagttnnnnnnnccggtcaagtatgagacaaaattttaaacaagaatctcatnnnnnnnnnnnnnnnnn |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25989831 |
ttaaggtatcttacatagtacaaaagataaaaagttaaaaaaaccggtcaagtatgagacaaaattttaaacaagaatctcataaaaaaaaaaaaaaaaa |
25989732 |
T |
|
| Q |
312 |
gcaacaaacttttgggaagaacatgtgatcatgtgtgaaagggtttttgttcttataccaaatttttgtgagcaataaggacaaaagttaacattgggag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25989731 |
gcaacaaacttttgggaagaacatgtgatcatgtgtgaaagggtttttgttcttataccaaatttttgtgagcaataaggacaaaagttaacattgggag |
25989632 |
T |
|
| Q |
412 |
agagtgtctttgtctaaaatgggcaaggttcagtgaatggaataactagaaagtaagtaaattcaagcaaaacgtgattagattctcaaacgagtatttt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25989631 |
agagtgtctttgtctaaaatgggcaaggttcagtgaatggaataactagaaagtaagtaaattcaagcaaaacgtgattagattctcaaacgagtatttt |
25989532 |
T |
|
| Q |
512 |
gtgtttcttgttttcttcgatgggaacctctcacgtatttcaaattaccaacttttttcaagagaagttgaagataaaatattgaagtaacatttcccca |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25989531 |
gtgtttcttgttttcttcgatgggaacctctcacgtatttcaaattaccaacttttttcaagagaagttgaagataaaatattgaagtagcatttcccca |
25989432 |
T |
|
| Q |
612 |
acgtatagtttt |
623 |
Q |
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|||||| ||||| |
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| T |
25989431 |
acgtattgtttt |
25989420 |
T |
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