View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_8 (Length: 621)
Name: NF16703_low_8
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 608
Target Start/End: Original strand, 9794702 - 9795292
Alignment:
| Q |
18 |
acctttttcaatcatttgatccactatctctttccctttaccaaatctaccactcagaaacaaaacccttgctaccagataatagctaacccaatctgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9794702 |
acctttttcaatcatttgatccactatctctttccctttaccaaatctaccactcaaaaacaaaacccttgacaccagataatagctaacccaatctgga |
9794801 |
T |
|
| Q |
118 |
gcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgtaactgattgaag |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9794802 |
gcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgtaactgattgaag |
9794901 |
T |
|
| Q |
218 |
ttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccggcataagtccggaaggattatttctgagatttctttcacaaaggcacct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9794902 |
ttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccagcacaagtccggaaggattatttctgagatttctttcacaaaggcacct |
9795001 |
T |
|
| Q |
318 |
aaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttgaataattctcctagattcctttacattcctctccagagaccaa |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |
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| T |
9795002 |
aaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttgaataattctccaagattccttcacattcctctccaaagaccaa |
9795101 |
T |
|
| Q |
418 |
ccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtgatgccaagctacaccttcagctctcttagcatgccctttagagc |
517 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9795102 |
ccataaagaagacttctataaacacaaggtagcactcctttaatcttgtctttgtgatgccaaactacaccttcagctctcttagcatgccctttagagc |
9795201 |
T |
|
| Q |
518 |
aaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtcttc |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9795202 |
aaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtcttc |
9795292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 608
Target Start/End: Complemental strand, 45146333 - 45145743
Alignment:
| Q |
18 |
acctttttcaatcatttgatccactatctctttccctttaccaaatctaccactcagaaacaaaacccttgctaccagataatagctaacccaatctgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
45146333 |
acctttttcaatcatttgatccactatctctttccctttaccaaatctaccactcataaacaaaacccttgtcaccagataatagctaacccaatctgga |
45146234 |
T |
|
| Q |
118 |
gcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgtaactgattgaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45146233 |
gcaacaccagatttgttcattgcttcaagtatttgacaagattccttaactcttctagtcttccccaaacaagaaagcaaaatgttgtaactgattgaag |
45146134 |
T |
|
| Q |
218 |
ttggaaaaaccttataagacctcatctccatcatcacattcaaagcttccggcataagtccggaaggattatttctgagatttctttcacaaaggcacct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45146133 |
ttggaaaaaccttataagacctcatctccatcatcacattcaaagcttcctgcacaagtccggaaggattatttctgagatttctttcacaaaggcacct |
45146034 |
T |
|
| Q |
318 |
aaggaatgtattatagcaaactaaatctggggttaccccatttgtcttcatctcttgaataattctcctagattcctttacattcctctccagagaccaa |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
45146033 |
aaggaatgtattatagcaaactatatctggggttaccccatttgtcttcatctcttgaataattctcctagattccttcacattcctctccatagaccaa |
45145934 |
T |
|
| Q |
418 |
ccataaagaagacttctataaacacaaggtagcgctcctttaatcttgtctttgtgatgccaagctacaccttcagctctcttagcatgccctttagagc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
45145933 |
ccataaagaagacttctataaacacaaggtagctctcctttaatcttgtctttgtgatgccaatctacaccttcagctctcttagcatgccctttagagc |
45145834 |
T |
|
| Q |
518 |
aaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtcttc |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45145833 |
aaagagcattaataatagcagtaaccgtgaattcatcaataagacatttatacttatccaaattcttgaaaatacccaatgcttcgtcttc |
45145743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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