View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_low_9 (Length: 587)
Name: NF16703_low_9
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 4141925 - 4141355
Alignment:
| Q |
1 |
ctagaatatagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttacttcttggattattaattaattgtcgaatggtt |
100 |
Q |
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| T |
4141925 |
ctagaatatagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttatttcttggattattaattaattgtcgaatggtt |
4141826 |
T |
|
| Q |
101 |
ttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttcacaatta |
200 |
Q |
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| T |
4141825 |
ttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacgttacatttgatatatttcacaatta |
4141726 |
T |
|
| Q |
201 |
tgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatg |
300 |
Q |
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| T |
4141725 |
tgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatg |
4141626 |
T |
|
| Q |
301 |
ctcaaggatgcacaaattttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcgcaatgggtatataaagaacga |
400 |
Q |
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| T |
4141625 |
ctcaaggatgcacaaatcttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcacaatgggtatataaagaacga |
4141526 |
T |
|
| Q |
401 |
caaagttataggagtgtagagcaaaatgaattacttatattgaactggttttctaccaacaaaggtagtatagtgtctctagagttaactagtgcagatg |
500 |
Q |
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| T |
4141525 |
caaagttataggagtgtagagcaaaatgaattacttatattgaactggttttctatcaacaaaggtagtatagtgtctctagagttaactagtgcagatg |
4141426 |
T |
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| Q |
501 |
aataacaagctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgatattctt |
571 |
Q |
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| T |
4141425 |
aataacaagctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgatattctt |
4141355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 3754937 - 3755085
Alignment:
| Q |
58 |
ttacatgttacttcttggattattaattaattgtcgaatggtt----ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-ca |
152 |
Q |
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| T |
3754937 |
ttacatgttatttcatggattattaattaatggacgaatgaatgatattgcagcttcagaaacttctgtcattttcatttatattatttgtttgttattt |
3755036 |
T |
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| Q |
153 |
ggtttttgttctctcgtcatacattacatttgatatatttcacaattatgca |
204 |
Q |
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| T |
3755037 |
ggttttttttctc---tcatacattacatttgatatagttcacaattttgca |
3755085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 4157727 - 4157675
Alignment:
| Q |
9 |
tagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatg |
64 |
Q |
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| T |
4157727 |
tagatgtagtgct--gtcacttgagcataggattatttccca-gaaaggttacatg |
4157675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 3755079 - 3755115
Alignment:
| Q |
287 |
ttttgcaatgtatgctcaaggatgcacaaattttata |
323 |
Q |
| |
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| T |
3755079 |
ttttgcaatgtatgctcaaggatgcagaaattttata |
3755115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 2677807 - 2677757
Alignment:
| Q |
294 |
atgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgca |
346 |
Q |
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| T |
2677807 |
atgtatgcttaaggatgcacaaattt--tataatgtttacttcaaatcttgca |
2677757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 3755121 - 3755157
Alignment:
| Q |
419 |
gagcaaaatgaattacttatattgaactggttttcta |
455 |
Q |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
3755121 |
gagccaaatgaattacttatactgaactggttttcta |
3755157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 95 - 322
Target Start/End: Original strand, 11082196 - 11082412
Alignment:
| Q |
95 |
atggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttca |
194 |
Q |
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||||||||| | ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
11082196 |
atggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttca |
11082295 |
T |
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| Q |
195 |
caattatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaa |
294 |
Q |
| |
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| T |
11082296 |
caattatgcattacgttatatgatacttcgttt-aatttctatgattctaa----------gatatttttcaaaggcattgtaattttcattttttgcat |
11082384 |
T |
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| Q |
295 |
tgtatgctcaaggatgcacaaattttat |
322 |
Q |
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||||||||||||| | ||||||| |||| |
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| T |
11082385 |
tgtatgctcaaggttacacaaatattat |
11082412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
| Q |
99 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat |
172 |
Q |
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| T |
1427351 |
ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat |
1427278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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