View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16704_high_1 (Length: 594)

Name: NF16704_high_1
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16704_high_1
NF16704_high_1
[»] chr5 (9 HSPs)
chr5 (45-588)||(26620661-26621214)
chr5 (289-404)||(35583239-35583355)
chr5 (294-404)||(25536537-25536647)
chr5 (462-537)||(8989994-8990070)
chr5 (454-560)||(38099021-38099128)
chr5 (462-557)||(13998992-13999090)
chr5 (462-537)||(35403200-35403276)
chr5 (359-398)||(30841222-30841261)
chr5 (454-500)||(36337202-36337249)
[»] chr1 (14 HSPs)
chr1 (485-557)||(17503958-17504030)
chr1 (454-544)||(9978241-9978332)
chr1 (455-567)||(12266690-12266803)
chr1 (359-445)||(15474871-15474956)
chr1 (462-557)||(27904551-27904651)
chr1 (361-397)||(18115891-18115927)
chr1 (454-535)||(15596726-15596808)
chr1 (462-527)||(16424277-16424343)
chr1 (362-404)||(25182684-25182726)
chr1 (359-400)||(18115825-18115866)
chr1 (362-403)||(43019847-43019888)
chr1 (462-557)||(8573784-8573880)
chr1 (517-557)||(17580111-17580151)
chr1 (359-399)||(44066561-44066601)
[»] chr3 (18 HSPs)
chr3 (462-557)||(29626036-29626132)
chr3 (454-557)||(49758608-49758712)
chr3 (462-557)||(18956725-18956821)
chr3 (454-557)||(21969332-21969436)
chr3 (454-557)||(21991768-21991872)
chr3 (454-557)||(27397900-27398004)
chr3 (517-557)||(45885668-45885708)
chr3 (467-536)||(9861045-9861115)
chr3 (462-535)||(10824026-10824100)
chr3 (359-401)||(13475482-13475524)
chr3 (466-555)||(19900097-19900187)
chr3 (484-538)||(22277332-22277386)
chr3 (462-535)||(34667244-34667317)
chr3 (454-540)||(54982297-54982383)
chr3 (359-404)||(21082697-21082741)
chr3 (454-557)||(7791471-7791575)
chr3 (462-557)||(17438956-17439052)
chr3 (454-557)||(45879550-45879654)
[»] chr8 (15 HSPs)
chr8 (462-557)||(15044499-15044595)
chr8 (457-557)||(13369357-13369458)
chr8 (359-404)||(32345235-32345280)
chr8 (359-404)||(32361843-32361888)
chr8 (363-401)||(37370069-37370107)
chr8 (454-560)||(11941357-11941465)
chr8 (454-560)||(11929828-11929935)
chr8 (467-537)||(30134286-30134357)
chr8 (455-557)||(45356665-45356767)
chr8 (415-546)||(9187339-9187470)
chr8 (462-535)||(23085227-23085299)
chr8 (469-537)||(4533924-4533993)
chr8 (454-525)||(2079510-2079582)
chr8 (505-557)||(3370121-3370173)
chr8 (359-403)||(24411931-24411975)
[»] chr7 (24 HSPs)
chr7 (454-557)||(39786300-39786404)
chr7 (359-523)||(22701595-22701757)
chr7 (457-557)||(9334467-9334568)
chr7 (454-557)||(7809560-7809664)
chr7 (486-557)||(15970810-15970881)
chr7 (454-544)||(17038279-17038370)
chr7 (454-527)||(36251494-36251568)
chr7 (454-523)||(39465570-39465640)
chr7 (463-528)||(41385924-41385990)
chr7 (454-557)||(14553698-14553803)
chr7 (359-404)||(39465473-39465518)
chr7 (467-557)||(15994820-15994911)
chr7 (467-557)||(20149481-20149572)
chr7 (476-557)||(19008644-19008726)
chr7 (462-538)||(20045153-20045228)
chr7 (462-539)||(48525709-48525787)
chr7 (359-404)||(7809715-7809760)
chr7 (359-404)||(39522872-39522917)
chr7 (359-404)||(48103114-48103159)
chr7 (517-557)||(662806-662846)
chr7 (454-486)||(1460419-1460451)
chr7 (462-517)||(21081332-21081388)
chr7 (359-403)||(27484363-27484407)
chr7 (462-557)||(36610107-36610203)
[»] scaffold1017 (1 HSPs)
scaffold1017 (359-535)||(2350-2526)
[»] chr4 (18 HSPs)
chr4 (462-557)||(2011924-2012020)
chr4 (289-404)||(54983210-54983325)
chr4 (454-544)||(53451019-53451110)
chr4 (462-557)||(34658976-34659072)
chr4 (462-557)||(35603337-35603433)
chr4 (470-544)||(10250327-10250402)
chr4 (413-540)||(19545370-19545497)
chr4 (462-538)||(143656-143733)
chr4 (359-557)||(4609138-4609335)
chr4 (359-404)||(28808477-28808522)
chr4 (454-550)||(34409976-34410073)
chr4 (467-511)||(36926818-36926863)
chr4 (454-538)||(54983049-54983134)
chr4 (359-511)||(24637723-24637877)
chr4 (454-538)||(26510440-26510525)
chr4 (359-404)||(47044363-47044408)
chr4 (454-486)||(37013652-37013684)
chr4 (454-509)||(47044482-47044538)
[»] chr2 (15 HSPs)
chr2 (359-404)||(31555615-31555660)
chr2 (462-537)||(9243872-9243948)
chr2 (468-557)||(16039110-16039200)
chr2 (454-542)||(31555706-31555795)
chr2 (454-538)||(37867415-37867500)
chr2 (474-529)||(19133117-19133173)
chr2 (462-544)||(38702435-38702518)
chr2 (462-538)||(1110844-1110922)
chr2 (461-502)||(7015356-7015398)
chr2 (468-557)||(24836505-24836594)
chr2 (469-537)||(20972934-20973003)
chr2 (454-557)||(36817707-36817812)
chr2 (454-557)||(42444334-42444439)
chr2 (462-537)||(27590770-27590846)
chr2 (462-537)||(35126151-35126227)
[»] chr6 (8 HSPs)
chr6 (454-557)||(23124192-23124296)
chr6 (467-557)||(11646273-11646364)
chr6 (454-560)||(14426363-14426471)
chr6 (454-535)||(30591058-30591139)
chr6 (330-404)||(14912155-14912229)
chr6 (487-560)||(14415666-14415739)
chr6 (454-557)||(26306465-26306569)
chr6 (454-525)||(31994310-31994382)
[»] scaffold0154 (1 HSPs)
scaffold0154 (454-544)||(32827-32918)
[»] scaffold0013 (1 HSPs)
scaffold0013 (454-537)||(101294-101378)
[»] scaffold0092 (1 HSPs)
scaffold0092 (359-402)||(6588-6631)
[»] scaffold0029 (1 HSPs)
scaffold0029 (359-397)||(72715-72753)
[»] scaffold0526 (1 HSPs)
scaffold0526 (454-557)||(9436-9540)
[»] scaffold0128 (1 HSPs)
scaffold0128 (454-557)||(43326-43430)
[»] scaffold0014 (1 HSPs)
scaffold0014 (517-557)||(15606-15646)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 45 - 588
Target Start/End: Original strand, 26620661 - 26621214
Alignment:
Q  45 gggagatcgtgagtcggaagaggaggatcaataaaggaaggaggaacagacaaatcaatgtcagaagtagaactagaagtttgagagggaaaataatctc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26620661 gggagatcgtgagtcggaagaggaggatcaataaaggaaggaggaacagacaaatcaatgtcagaagtagaactagaagtttgagagggaaaataatctc 26620760  T
Q  145 aatcagaattaatagacaaagaagacttaggaaaggtaatatatgttcatgaaaaacaacattttgg---------tatttatagtgacgtatacttgat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |         ||||||||||| ||||||||||||    
T  26620761 aatcagaattaatagacaaagaagacttaggaaaggtaatatatgttcatgaaaaacaatatttttgtattgattatatttatagtggcgtatacttgat 26620860  T
Q  236 ccagtttgctatattttcttaaggataaaggc---nnnnnnntggatatatgatcgtatcttgtttattacacgaaatattttgtatggtaaccaat-aa 331  Q
    |||||||| |||||||| ||||||||||||||           | | ||||||   ||||||||||||||||||| ||||||||||||||||||||| ||    
T  26620861 ccagtttgttatatttttttaaggataaaggcaaaaaaaaaaagaacatatga---tatcttgtttattacacgatatattttgtatggtaaccaataaa 26620957  T
Q  332 taaatattgtgtttgttacnnnnnnnnaatatttgaattctctctcatccattatcttttttaaatgataaggnnnnnnnccagacatatatagtttgtt 431  Q
    |||||||  ||||||||||        |||||||||||||||||| |||||||||||||||||||||||||||        |||||||||| | ||| ||    
T  26620958 taaatatcttgtttgttacttttttttaatatttgaattctctcttatccattatcttttttaaatgataaggaaaaaaatcagacatatacaatttttt 26621057  T
Q  432 acattttgttttaannnnnnnnatttactgttatatatttgttatatgtgttattgtattgaaagttgatggcaattttgcaagaagaaaaagtcaaccc 531  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  26621058 acattttgttttaattttttttatttactgttatatatttgttatatgtgttattgtattgaaagttgagggcaattttgcaagaataaaaagtcaaccc 26621157  T
Q  532 aaaagagtcaaaagatgttattttctatagataaatgtaattattgagtcaaccttt 588  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  26621158 aaaagaggcaaaagatgttatttcctatagataaatgtaaatattgagtcaaccttt 26621214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 35583239 - 35583355
Alignment:
Q  289 tatcttgtttattacacgaaatattttgtatggtaaccaataa-taaatattgtgtttgttacnnnnnnnnaatatttgaattctctctcatccattatc 387  Q
    |||| ||||| |||||||| ||||||||| | |||||||| || |||| ||||| ||||||||        |||||||||||||  ||||||||||||||    
T  35583239 tatcgtgtttgttacacgatatattttgtgttgtaaccaaaaaataaacattgtctttgttacacttttttaatatttgaattcattctcatccattatc 35583338  T
Q  388 ttttttaaatgataagg 404  Q
    |||||||||| ||||||    
T  35583339 ttttttaaataataagg 35583355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 404
Target Start/End: Complemental strand, 25536647 - 25536537
Alignment:
Q  294 tgtttattacacgaaatattttgtatggtaaccaataa-taaatattgtgtttgttacnnnnnnnnaatatttgaattctctctcatccattatcttttt 392  Q
    ||||| |||||||| |||||| || ||| |||||| || |||||||| ||||||||||        ||||||||||||| |||||||| |||||||||||    
T  25536647 tgtttgttacacgatatattt-gtgtggaaaccaagaaataaatattatgtttgttacatttttttaatatttgaattcactctcatctattatcttttt 25536549  T
Q  393 taaatgataagg 404  Q
    ||||||||||||    
T  25536548 taaatgataagg 25536537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 537
Target Start/End: Original strand, 8989994 - 8990070
Alignment:
Q  462 ttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaaga 537  Q
    ||||||||||||||||||||||| |||| ||||||||||| || ||||||  ||| ||||||||  |||||||||||    
T  8989994 ttatatatttgttatatgtgttatttgtgttgaaagttgagggtaattttagaaggagaaaaagcaaacccaaaaga 8990070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 454 - 560
Target Start/End: Original strand, 38099021 - 38099128
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| ||||| | |||||||| ||| | |||||||||||| || |||| || ||| |||||||||||| |||||||| ||||||||   |||    
T  38099021 atttactcttatctatttatcatatgtgtgatttgcattgaaagttgagggtaattctgaaaggagaaaaagtcaatccaaaagaatcaaaagagactat 38099120  T
Q  553 tttctata 560  Q
    ||||||||    
T  38099121 tttctata 38099128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 557
Target Start/End: Complemental strand, 13999090 - 13998992
Alignment:
Q  462 ttatatatttgttatatgtgttat---tgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||| ||||||||| |||||||||   |||||||||| |||| |||| ||||| ||  |||||||||||  ||||||||||  ||||| ||||||||||    
T  13999090 ttatctatttgttacatgtgttatatttgtattgaaaattgagggcacttttggaaagagaaaaagtcagtccaaaagagttgaaagaggttattttct 13998992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 537
Target Start/End: Original strand, 35403200 - 35403276
Alignment:
Q  462 ttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaaga 537  Q
    |||||||||| |||||||||||| ||||||||||| |||||| || ||||  || |||||||| ||||| |||||||    
T  35403200 ttatatattttttatatgtgttatttgtattgaaaattgatgacatttttaaaaaaagaaaaaatcaactcaaaaga 35403276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 30841222 - 30841261
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatg 398  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  30841222 aatatttgaattcactgtcatccattatcttttttaaatg 30841261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 500
Target Start/End: Complemental strand, 36337249 - 36337202
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttga 500  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  36337249 atttattgttatatatttgttatgtgtgttatttgtattgaaagttga 36337202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 485 - 557
Target Start/End: Complemental strand, 17504030 - 17503958
Alignment:
Q  485 ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  17504030 ttgtatttaaagttgatggtaattttgaaagaagaaaaagtcaacccaaaaaagtcaaaagatgttattttct 17503958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 544
Target Start/End: Complemental strand, 9978332 - 9978241
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaa 544  Q
    ||||||| |||| ||||||||||| |||||||| ||||| |||||||| || ||||||| ||  || |||| ||||||||||||||||||||    
T  9978332 atttactcttatttatttgttatacgtgttatttgtattaaaagttgacggtaattttggaaagaggaaaattcaacccaaaagagtcaaaa 9978241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 455 - 567
Target Start/End: Complemental strand, 12266803 - 12266690
Alignment:
Q  455 tttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttatt 553  Q
    |||||| |||| |||||||||||||||||| ||||||| |||||||| || |  |||| ||  ||||||||||| || ||||||| ||||| ||| ||||    
T  12266803 tttactcttatctatttgttatatgtgttatttgtattaaaagttgagggtagatttgaaaagagaaaaagtcagcctaaaagagccaaaatatgatatt 12266704  T
Q  554 ttctatagataaat 567  Q
    |||| || ||||||    
T  12266703 ttctttatataaat 12266690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 15474956 - 15474871
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataaggnnnnnnnccagacatatatagtttgttacattttgttttaa 445  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||        | |||||||||| ||||||||||||||||||||    
T  15474956 aatatttgaattcactctcatccgttatcatttttaaatgataaggaaaaaat-cggacatatataatttgttacattttgttttaa 15474871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 462 - 557
Target Start/End: Original strand, 27904551 - 27904651
Alignment:
Q  462 ttatatatttgttatatgtgttatt----gtattgaaagtt-gatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttc 556  Q
    |||||||||||||| ||||||||||    ||||||||| || || |||| ||||| || ||||||||||||||| |||||||  |||||| |||||||||    
T  27904551 ttatatatttgttacatgtgttattatttgtattgaaaatttgagggcatttttggaaaaagaaaaagtcaacctaaaagagctaaaagaggttattttc 27904650  T
Q  557 t 557  Q
    |    
T  27904651 t 27904651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 18115927 - 18115891
Alignment:
Q  361 tatttgaattctctctcatccattatcttttttaaat 397  Q
    ||||||||||| |||||||||||||||||||||||||    
T  18115927 tatttgaattcactctcatccattatcttttttaaat 18115891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 535
Target Start/End: Complemental strand, 15596808 - 15596726
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaa 535  Q
    ||||||| |||| |||||||||||||| ||| ||||||| |||||||| || |||||   ||  |||||||||||||||||||    
T  15596808 atttactcttatctatttgttatatgtattatttgtatttaaagttgaaggtaatttaagaaagagaaaaagtcaacccaaaa 15596726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 527
Target Start/End: Complemental strand, 16424343 - 16424277
Alignment:
Q  462 ttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtca 527  Q
    |||||||||||||| |||||||| ||||||| ||| |||| |||| ||||| || ||||||||||||    
T  16424343 ttatatatttgttacatgtgttatttgtatttaaaattgagggcatttttgaaaaaagaaaaagtca 16424277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 404
Target Start/End: Original strand, 25182684 - 25182726
Alignment:
Q  362 atttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    |||||||||| || ||||| |||||||||||||||||||||||    
T  25182684 atttgaattcgctttcatctattatcttttttaaatgataagg 25182726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 18115866 - 18115825
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgat 400  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||    
T  18115866 aatatttaaattcactctcatccattatcttttttgaatgat 18115825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 403
Target Start/End: Complemental strand, 43019888 - 43019847
Alignment:
Q  362 atttgaattctctctcatccattatcttttttaaatgataag 403  Q
    |||||||||| |||||||| ||||| ||||||||||||||||    
T  43019888 atttgaattcactctcatcaattattttttttaaatgataag 43019847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 557
Target Start/End: Complemental strand, 8573880 - 8573784
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||| ||||||||| |||||||||| ||||||||| |||||| || ||||| ||   ||||||||||  |||||||||   ||| ||||||||||||    
T  8573880 ttatctatttgttacatgtgttatttgtattgaaaattgatgacatttttgtaaagggaaaaagtcagtccaaaagagctgaaaaatgttattttct 8573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 557
Target Start/End: Original strand, 17580111 - 17580151
Alignment:
Q  517 agaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||||||||||||| |||||||  |||||||||||||||||    
T  17580111 agaaaaagtcaacctaaaagagctaaaagatgttattttct 17580151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 44066561 - 44066601
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatga 399  Q
    ||||||||||||| ||||||||  |||||||||||||||||    
T  44066561 aatatttgaattcactctcatctgttatcttttttaaatga 44066601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 462 - 557
Target Start/End: Original strand, 29626036 - 29626132
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    ||||||||||||||||||||||||| |||||||||||||| |  ||||||| ||  ||||||||||| |||||||||||||||  ||||||||||||    
T  29626036 ttatatatttgttatatgtgttatttgtattgaaagttgaagataattttggaaagagaaaaagtcagcccaaaagagtcaaagcatgttattttct 29626132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 454 - 557
Target Start/End: Original strand, 49758608 - 49758712
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| |||||||||||||||||||| || ||||||||||| |  ||||||  ||  |||||||||||||||||||||||||||| ||| |||    
T  49758608 atttactcttatctatttgttatatgtgttatttgttttgaaagttgaggataattttagaaacagaaaaagtcaacccaaaagagtcaaaacatgctat 49758707  T
Q  553 tttct 557  Q
    |||||    
T  49758708 tttct 49758712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 462 - 557
Target Start/End: Complemental strand, 18956821 - 18956725
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||| ||||||||| |||||||||| ||||||||| ||||||||| ||||| ||  |||||| |||||||||||||||   ||||| ||||||||||    
T  18956821 ttatctatttgttacatgtgttatttgtattgaaaattgatggcatttttggaaatagaaaaggtcaacccaaaagagctgaaagaggttattttct 18956725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 21969436 - 21969332
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaatttt-gcaagaagaaaaagtcaacccaaaagagtcaaaagatgtta 551  Q
    ||||||| ||||||||||||||| |||  |||| |||||||||||||| || |||||| | |||| ||||| |||||||||||| || ||||| ||||||    
T  21969436 atttactcttatatatttgttatgtgttctatttgtattgaaagttgagggtaattttagaaagatgaaaa-gtcaacccaaaatagccaaaacatgtta 21969338  T
Q  552 ttttct 557  Q
    ||||||    
T  21969337 ttttct 21969332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 21991872 - 21991768
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaatttt-gcaagaagaaaaagtcaacccaaaagagtcaaaagatgtta 551  Q
    ||||||| ||||||||||||||| |||  |||| |||||||||||||| || |||||| | |||| ||||| |||||||||||| || ||||| ||||||    
T  21991872 atttactcttatatatttgttatgtgttctatttgtattgaaagttgagggtaattttagaaagatgaaaa-gtcaacccaaaatagccaaaacatgtta 21991774  T
Q  552 ttttct 557  Q
    ||||||    
T  21991773 ttttct 21991768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 27398004 - 27397900
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| |||||||||||||| ||||| |||||||||||| | || ||| ||| ||  ||||| | ||||||||||| || ||||| |||||||    
T  27398004 atttactcttatttatttgttatatgtcttatttgtattgaaagtttagggtaatattggaaagagaaataatcaacccaaaaaagccaaaacatgttat 27397905  T
Q  553 tttct 557  Q
    |||||    
T  27397904 tttct 27397900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 517 - 557
Target Start/End: Complemental strand, 45885708 - 45885668
Alignment:
Q  517 agaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  45885708 agaaaaagtcaacccaaaagagttgaaagatgttattttct 45885668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 536
Target Start/End: Original strand, 9861045 - 9861115
Alignment:
Q  467 tatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaag 536  Q
    ||||||||| || ||||||| ||||||||| |||| |||| ||||| || |||||||| ||||||||||||    
T  9861045 tatttgttacatttgttatttgtattgaaaattgagggcatttttgaaaaaagaaaaactcaacccaaaag 9861115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 10824100 - 10824026
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaa 535  Q
    |||| ||||||||| |||||||||| ||||||||| ||||||||| ||||| ||  ||||||||| || ||||||    
T  10824100 ttatctatttgttacatgtgttatttgtattgaaaattgatggcatttttgaaaagagaaaaagtaaatccaaaa 10824026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 401
Target Start/End: Original strand, 13475482 - 13475524
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgata 401  Q
    ||||||||||||  ||||||| |||||||||||||||||||||    
T  13475482 aatatttgaatttactctcattcattatcttttttaaatgata 13475524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 555
Target Start/End: Complemental strand, 19900187 - 19900097
Alignment:
Q  466 atatttgttatatgtgttattg-tattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttatttt 555  Q
    |||||||| |||| |||||||  ||||||||||||| || ||||||| || |||||||||||| | |||||||| ||| | ||||| ||||    
T  19900187 atatttgtgatatatgttatttctattgaaagttgaaggtaattttgaaaaaagaaaaagtcagcacaaaagagacaagatatgttttttt 19900097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 22277386 - 22277332
Alignment:
Q  484 attgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagag 538  Q
    |||||||||||||||||  ||||||||| || |||||||| |||| |||||||||    
T  22277386 attgtattgaaagttgagagcaattttgaaaaaagaaaaaatcaatccaaaagag 22277332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 34667317 - 34667244
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaa 535  Q
    |||| ||||||||||||| | |||| ||||||||||||||||| ||||||| ||| ||||||| ||| |||||||    
T  34667317 ttatctatttgttatatgcgctatttgtattgaaagttgatggtaattttggaag-agaaaaaatcagcccaaaa 34667244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 540
Target Start/End: Complemental strand, 54982383 - 54982297
Alignment:
Q  454 atttactgttatatatttgttatatgtgttattgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtc 540  Q
    ||||||| ||||||||||||||| |||  | ||||||| ||| |||| || ||||| | ||  ||||||||||| ||||||||||||    
T  54982383 atttactcttatatatttgttatgtgttattttgtatttaaatttgagggtaatttaggaaagagaaaaagtcatcccaaaagagtc 54982297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 21082741 - 21082697
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||    
T  21082741 aatatttgaattcact-tcatccattatcttttttaaataataagg 21082697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 557
Target Start/End: Original strand, 7791471 - 7791575
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||||||||||| ||||||| || |||||| |||||||||  | ||||| | ||  ||||||||  || |||||||||  |||| |||||||    
T  7791471 atttactcttatatatttgtcatatgtgatatttgtatcgaaagttgagtgtaatttcgtaaagagaaaaagctaatccaaaagaggaaaaacatgttat 7791570  T
Q  553 tttct 557  Q
    |||||    
T  7791571 tttct 7791575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 557
Target Start/End: Original strand, 17438956 - 17439052
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||| ||||||||| |||||||||| ||||||||| |||| || ||||||| ||  ||  |||| || ||||||||||  |||||| ||||||||||    
T  17438956 ttatctatttgttacatgtgttatttgtattgaaaattgagggtaattttggaaagaggtaaagccagcccaaaagagctaaaagaggttattttct 17439052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 45879654 - 45879550
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| | ||||||||||||||| |  |||| ||||||||||| || || ||||||  ||  ||||||||||||| ||||| || ||||| ||| |||    
T  45879654 atttactctaatatatttgttatatatactatttgtattgaaagtcgagggtaattttaaaaagagaaaaagtcaacacaaaatagccaaaacatgctat 45879555  T
Q  553 tttct 557  Q
    |||||    
T  45879554 tttct 45879550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 462 - 557
Target Start/End: Original strand, 15044499 - 15044595
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||| |||||||||||||||||||| |||||||||||||| || ||||| | || ||||||||||||||||||||||  ||||| ||| ||||||||    
T  15044499 ttatctatttgttatatgtgttatttgtattgaaagttgagggtaatttcggaaaaagaaaaagtcaacccaaaagaaacaaaacatgctattttct 15044595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 457 - 557
Target Start/End: Original strand, 13369357 - 13369458
Alignment:
Q  457 tactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttatttt 555  Q
    |||| |||| ||||| |||||||||||||| |||||||||||||| || ||||||| ||  ||||||||| | | |||||||| ||||| ||||||||||    
T  13369357 tactcttatctatttattatatgtgttatttgtattgaaagttgagggtaattttgaaaagagaaaaagtaagctcaaaagagccaaaacatgttatttt 13369456  T
Q  556 ct 557  Q
    ||    
T  13369457 ct 13369458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 32345235 - 32345280
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  32345235 aatatttgaattcactctcatccattatcttttttaaatgataagg 32345280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 32361843 - 32361888
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  32361843 aatatttgaattcactctcatccattatcttttttaaatgataagg 32361888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 37370107 - 37370069
Alignment:
Q  363 tttgaattctctctcatccattatcttttttaaatgata 401  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37370107 tttgaattctctctcatccattatcttttttaaatgata 37370069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 560
Target Start/End: Complemental strand, 11941465 - 11941357
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaa-gtcaacccaaaagagtcaaaagatgtta 551  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||| || ||||||| ||  ||||||| ||||   |||||||| ||||  ||| ||    
T  11941465 atttactcttatctatttgttatatgtgttatttgtattgaaagttgagggtaattttgaaaagagaaaaacgtcagtgcaaaagagccaaatcatgcta 11941366  T
Q  552 ttttctata 560  Q
    |||||||||    
T  11941365 ttttctata 11941357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 454 - 560
Target Start/End: Original strand, 11929828 - 11929935
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||| | || ||||||  ||  | |||| ||||  ||||||||| ||||| ||| |||    
T  11929828 atttactcttatctatttgttatatgtgttatttgtattgaaagttaagggtaattttaaaaagaaaaaatgtcagtccaaaagagccaaaacatgctat 11929927  T
Q  553 tttctata 560  Q
    ||||||||    
T  11929928 tttctata 11929935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 30134357 - 30134286
Alignment:
Q  467 tatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaaga 537  Q
    |||||||||||||||||||| ||||||||| |||| |  ||||||||||  ||||||||| |||||||||||    
T  30134357 tatttgttatatgtgttatttgtattgaaaattgaagttaattttgcaaagagaaaaagttaacccaaaaga 30134286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 557
Target Start/End: Original strand, 45356665 - 45356767
Alignment:
Q  455 tttactgttatatatttgttatatgtgttattgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattt 554  Q
    |||||| |||| ||||||||| ||||||| ||||||| |||||| | || ||||||| ||  |||||||||||| |||||| |  ||||| |||| ||||    
T  45356665 tttactcttatctatttgttacatgtgtttttgtatttaaagttaagggtaattttggaaagagaaaaagtcaatccaaaaaaaccaaaacatgtcattt 45356764  T
Q  555 tct 557  Q
    |||    
T  45356765 tct 45356767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 546
Target Start/End: Complemental strand, 9187470 - 9187339
Alignment:
Q  415 gacatatatagtttgttacattttgttttaannnnnnnnatttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgca 513  Q
    |||||||| ||||||||||||||| ||||||        ||||||  |||| |||||||||||| ||||||| |||||||| ||||||||  |||||| |    
T  9187470 gacatatacagtttgttacattttattttaatatttga-atttacctttatctatttgttatatatgttatttgtattgaatgttgatggtgattttgga 9187372  T
Q  514 agaagaaaaagtcaacccaaaagagtcaaaaga 546  Q
    |  ||||||||||| | |||| ||| |||||||    
T  9187371 atgagaaaaagtcagcacaaatgagccaaaaga 9187339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 23085299 - 23085227
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaa 535  Q
    |||| ||||||||| |||||||||| ||||||||| |||| | || ||||||||  |||||||||||||||||||    
T  23085299 ttatttatttgttacatgtgttatttgtattgaaaattgaagacatttttgcaa--agaaaaagtcaacccaaaa 23085227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 537
Target Start/End: Complemental strand, 4533993 - 4533924
Alignment:
Q  469 tttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaaga 537  Q
    |||||||||||| ||||| |||||||||||||| || ||||||| || |||||||| | | |||||||||    
T  4533993 tttgttatatgtattatttgtattgaaagttgagggtaattttggaaaaagaaaaaattagcccaaaaga 4533924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 525
Target Start/End: Original strand, 2079510 - 2079582
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagt 525  Q
    ||||||| |||| |||||||||||||||||| ||||||| |||||||| |  ||||||| ||  |||||||||    
T  2079510 atttacttttatctatttgttatatgtgttatttgtattaaaagttgaggctaattttggaaagagaaaaagt 2079582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 557
Target Start/End: Original strand, 3370121 - 3370173
Alignment:
Q  505 aattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    ||||||| || |||||||||||||||||||| || | ||| ||||||||||||    
T  3370121 aattttgaaaaaagaaaaagtcaacccaaaaaagccgaaacatgttattttct 3370173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 24411931 - 24411975
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataag 403  Q
    ||||||||||||  || | ||||||||||||||||||||||||||    
T  24411931 aatatttgaattaactttgatccattatcttttttaaatgataag 24411975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 39786404 - 39786300
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||||| || | ||||| ||  ||||||||||| ||||||||||||| || ||| |||    
T  39786404 atttactcttatctatttgttatatgtgttatttgtattgaaagttgagggtagttttggaaagagaaaaagtcagcccaaaagagtcagaacatgctat 39786305  T
Q  553 tttct 557  Q
    |||||    
T  39786304 tttct 39786300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 359 - 523
Target Start/End: Complemental strand, 22701757 - 22701595
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataaggnnnnnnnccagacatatatagtttgttacattttgttttaannnnnnnnattta 458  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||        |||||||||| | ||||||||||||| ||||||        |||||    
T  22701757 aatatttgaattcactctcatccattatcttttttaaacgataaggaaaaaa--cagacatatacaatttgttacattttattttaa-tatttgaattta 22701661  T
Q  459 ctgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaa 523  Q
    || |||| ||||||||||||||| |||| | | |||||||||| || ||||||| ||| |||||||    
T  22701660 ctcttatctatttgttatatgtgatattcgcaatgaaagttgagggtaattttggaaggagaaaaa 22701595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 457 - 557
Target Start/End: Complemental strand, 9334568 - 9334467
Alignment:
Q  457 tactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttatttt 555  Q
    |||| |||| |||||||||||| | ||||| ||||||||| |||| || ||||||| ||  |||||| |||| |||||||||||||||| ||||||||||    
T  9334568 tacttttatctatttgttatatatattatttgtattgaaaattgagggtaattttgaaaagagaaaatgtcagcccaaaagagtcaaaacatgttatttt 9334469  T
Q  556 ct 557  Q
    ||    
T  9334468 ct 9334467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 7809664 - 7809560
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| | |||||||||| | ||||| ||||||||| |||| |||||||||| ||| |||||||| ||||||||||||| ||||| | | |||    
T  7809664 atttactcttatctgtttgttatatatattatttgtattgaaaattgaaggcaattttgtaaggagaaaaagacaacccaaaagagccaaaataggctat 7809565  T
Q  553 tttct 557  Q
    |||||    
T  7809564 tttct 7809560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 486 - 557
Target Start/End: Complemental strand, 15970881 - 15970810
Alignment:
Q  486 tgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    ||||||||||||||| || ||||||| || ||||||||| |||  |||||||| ||||| ||||||||||||    
T  15970881 tgtattgaaagttgagggtaattttgaaaaaagaaaaagccaagtcaaaagaggcaaaacatgttattttct 15970810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 454 - 544
Target Start/End: Complemental strand, 17038370 - 17038279
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaa 544  Q
    ||||||| |||| |||||||||||||||  ||| ||||||||||||||| | ||||||| ||  ||||||| ||| ||||||||| ||||||    
T  17038370 atttactcttatctatttgttatatgtgcaatttgtattgaaagttgattgtaattttgaaaagagaaaaattcagcccaaaagaatcaaaa 17038279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 527
Target Start/End: Complemental strand, 36251568 - 36251494
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtca 527  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||| || ||||||  || || |||||||||    
T  36251568 atttactcttatctatttgttatatgtgttatttgtattgaaagttgaaggtaattttagaaaaataaaaagtca 36251494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 39465570 - 39465640
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaa 523  Q
    ||||||| |||| |||||||||||||| ||||| |||||||||||||| || ||||||| ||| |||||||    
T  39465570 atttacttttatctatttgttatatgtattatttgtattgaaagttgagggtaattttgaaaggagaaaaa 39465640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 528
Target Start/End: Original strand, 41385924 - 41385990
Alignment:
Q  463 tatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaa 528  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||||| ||  | ||||||||||    
T  41385924 tatatatttgttatatgtgttatttgtattaaaagttgatggtaattttgaaaagataaaaagtcaa 41385990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 557
Target Start/End: Original strand, 14553698 - 14553803
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaag-aaaaagtcaacccaaaagagtcaaaagatgtta 551  Q
    ||||||| |||| ||||||||||||||| || ||||||| ||||||||  | |||||   || ||| ||||| ||||||||||||||  |||||||||||    
T  14553698 atttacttttatctatttgttatatgtgctatttgtatttaaagttgagagtaatttaagaaaaagaaaaaaatcaacccaaaagagctaaaagatgtta 14553797  T
Q  552 ttttct 557  Q
    ||||||    
T  14553798 ttttct 14553803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 39465473 - 39465518
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||    
T  39465473 aatatttgaattcactctcgtacattatcttttttaaatgataagg 39465518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 557
Target Start/End: Original strand, 15994820 - 15994911
Alignment:
Q  467 tatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    ||||||||||||||| |||| ||||| ||||||||  | |||||   ||  |||||| |||||||||||||||  |||||||||||||||||    
T  15994820 tatttgttatatgtgctatttgtatttaaagttgagagtaatttgagaaagagaaaatgtcaacccaaaagagctaaaagatgttattttct 15994911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 557
Target Start/End: Original strand, 20149481 - 20149572
Alignment:
Q  467 tatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    ||||| ||| |||||||||| ||||||||| |||| |||| ||||| ||||| |||| ||||  |||||||||   ||||||||||||||||    
T  20149481 tatttattacatgtgttatttgtattgaaaattgagggcatttttggaagaaaaaaatgtcagtccaaaagaggtgaaagatgttattttct 20149572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 557
Target Start/End: Original strand, 19008644 - 19008726
Alignment:
Q  476 tatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    ||||||||||| |||||||||||| |||| ||||||| ||  | ||||||||| ||||||| |  ||||| ||||||||||||    
T  19008644 tatgtgttatttgtattgaaagtttatggtaattttgaaaagataaaaagtcagcccaaaaaaaccaaaacatgttattttct 19008726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 538
Target Start/End: Complemental strand, 20045228 - 20045153
Alignment:
Q  462 ttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagag 538  Q
    |||||||||||||| |||||||| ||||||||||| |||| || | ||||| |  |||||||| ||||||||||||||    
T  20045228 ttatatatttgttacatgtgttatttgtattgaaaattgagggaatttttgga--aagaaaaattcaacccaaaagag 20045153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 48525787 - 48525709
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagt 539  Q
    |||| ||||||||| |||||||||| ||||||||| |||| || | ||||| || |||||||||||| | |||||||||    
T  48525787 ttatctatttgttacatgtgttatttgtattgaaaattgagggtatttttggaaaaagaaaaagtcagctcaaaagagt 48525709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 7809760 - 7809715
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    ||||||| |||||  |||||||| ||||||||||||||||||||||    
T  7809760 aatatttaaattcagtctcatcctttatcttttttaaatgataagg 7809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 39522917 - 39522872
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    ||||||||||||| || ||||||||| |||||||||||||| ||||    
T  39522917 aatatttgaattcactttcatccattgtcttttttaaatgaaaagg 39522872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 48103159 - 48103114
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    ||||||||||||| ||||| || ||||||||||| |||||||||||    
T  48103159 aatatttgaattcactctcgtctattatctttttaaaatgataagg 48103114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 557
Target Start/End: Complemental strand, 662846 - 662806
Alignment:
Q  517 agaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    ||||||||||||| |||||||| ||||||||| ||||||||    
T  662846 agaaaaagtcaactcaaaagaggcaaaagatgctattttct 662806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 486
Target Start/End: Complemental strand, 1460451 - 1460419
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt 486  Q
    ||||||| |||||||||||||||||||||||||    
T  1460451 atttactattatatatttgttatatgtgttatt 1460419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 517
Target Start/End: Complemental strand, 21081388 - 21081332
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaa 517  Q
    |||| ||||||||| |||||||||| ||||||||| ||||||||| ||||| |||||    
T  21081388 ttatctatttgttacatgtgttatttgtattgaaaattgatggcatttttgaaagaa 21081332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 27484363 - 27484407
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataag 403  Q
    ||||||||||||  || ||||||||||||||||||||| ||||||    
T  27484363 aatatttgaatttactttcatccattatcttttttaaacgataag 27484407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 557
Target Start/End: Original strand, 36610107 - 36610203
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||| ||||||||| |||||||||| ||||||||| ||||  | | ||||| ||  |||||||||||  |||||||||   ||||||||||||||||    
T  36610107 ttatctatttgttacatgtgttatttgtattgaaaattgaatgtatttttgaaaagagaaaaagtcagtccaaaagagctgaaagatgttattttct 36610203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 359 - 535
Target Start/End: Original strand, 2350 - 2526
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataaggnnnnnnnccagacatatatagtttgttacattttgttttaannnnnnnnattta 458  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||        | |||||||  | ||||||||||||||||||||        |||||    
T  2350 aatatttgaattcactttcatctattatcttttttaaatgataaggaaaaaaatcggacatatgcaatttgttacattttgttttaatatttgt-attta 2448  T
Q  459 ctgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaa 535  Q
     | |||| |||||||||||||||||||| ||||||| || ||| || ||||||| ||| |||||||||||| ||||||    
T  2449 tttttatctatttgttatatgtgttatttgtattgagagatgagggtaattttgaaaggagaaaaagtcaatccaaaa 2526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 462 - 557
Target Start/End: Original strand, 2011924 - 2012020
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||| |||||||||||||||| ||| |||||||||||||| || ||||||  ||  |||||||||||| ||||||||| ||||| ||||||||||||    
T  2011924 ttatttatttgttatatgtgtaatttgtattgaaagttgagggtaattttaaaaagagaaaaagtcaatccaaaagaggcaaaacatgttattttct 2012020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 54983325 - 54983210
Alignment:
Q  289 tatcttgtttattacacgaaatattttgtatggtaaccaataataaatattgtgtttgttacnnnnnnnn-aatatttgaattctctctcatccattatc 387  Q
    |||| ||||| |||||||| |||||||||| |||||  || |||||||||||||||||||||         ||||||||||||  |||||||||||||||    
T  54983325 tatcgtgtttgttacacgatatattttgtaaggtaataaa-aataaatattgtgtttgttacattttttttaatatttgaattaactctcatccattatc 54983227  T
Q  388 ttttttaaatgataagg 404  Q
    |||||||||||||||||    
T  54983226 ttttttaaatgataagg 54983210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 454 - 544
Target Start/End: Complemental strand, 53451110 - 53451019
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaa 544  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||||| || |||||||  |  ||||||||||| || |||||||||||||    
T  53451110 atttactcttatctatttgttatatgtgttatttgtattgaaagttgagggtaattttgggaagagaaaaagtcagcctaaaagagtcaaaa 53451019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 557
Target Start/End: Complemental strand, 34659072 - 34658976
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||| |||||||||||||||||||| ||||||||||||||||| ||||||  ||  | |||| |  || | ||||||||||||| ||||||||||||    
T  34659072 ttatttatttgttatatgtgttatttgtattgaaagttgatggtaattttataaagataaaacgctaatctaaaagagtcaaaacatgttattttct 34658976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 557
Target Start/End: Original strand, 35603337 - 35603433
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||| ||||||||| |||||||||| ||||||||| ||||||||| ||| | ||  ||||||||||| |||||||||||   |||| ||||||||||    
T  35603337 ttatctatttgttacatgtgttatttgtattgaaaattgatggcattttggaaaagagaaaaagtcagcccaaaagagttggaagaggttattttct 35603433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 544
Target Start/End: Complemental strand, 10250402 - 10250327
Alignment:
Q  470 ttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaa 544  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||| ||  |||||||||||  | |||||||||||||    
T  10250402 ttgttgtatgtgttatttgtattgaaagttgatggtaattttggaaagagaaaaagtcattctaaaagagtcaaaa 10250327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 413 - 540
Target Start/End: Complemental strand, 19545497 - 19545370
Alignment:
Q  413 cagacatatatagtttgttacattttgttttaannnnnnnnatttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttg 511  Q
    |||||||||| ||||||||||||||| ||||||        ||||||| |||||||||| ||||||||| |||| | |||||| ||||| || |||||||    
T  19545497 cagacatatacagtttgttacattttattttaatatttaa-atttactcttatatatttcttatatgtgctatttgcattgaatgttgaaggtaattttg 19545399  T
Q  512 caagaagaaaaagtcaacccaaaagagtc 540  Q
     |||||||||| || |  |||||||||||    
T  19545398 gaagaagaaaatgttagtccaaaagagtc 19545370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 538
Target Start/End: Original strand, 143656 - 143733
Alignment:
Q  462 ttatatatttgttatatgtgttattg-tattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagag 538  Q
    |||| ||||||||||||||||||||  |||||||| |||| || | ||||| ||  ||||||||||||||||||||||    
T  143656 ttatctatttgttatatgtgttatttatattgaaaattgagggtatttttgaaaagagaaaaagtcaacccaaaagag 143733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 557
Target Start/End: Complemental strand, 4609335 - 4609138
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataaggnnnnnnnccagacatatatagtttgttacattttgttttaannnnnnnnattta 458  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||| |        |||||||||| | |||| |||||||||||| ||        |||||    
T  4609335 aatatttaaattcactcttatccattatcttttttaaatgataacgaaaaatt-cagacatataaaatttgatacattttgtttgaa-tatttgaattta 4609238  T
Q  459 ctgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    || |||| |||||||||||| || || ||| |||||| | ||||||  |||||  ||| |||||||| ||   ||||||| |||||||||||||||||||    
T  4609237 ctcttatctatttgttatatatgatatttgaattgaatgatgatggtgattttcgaaggagaaaaagacagttcaaaagaatcaaaagatgttattttct 4609138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 28808522 - 28808477
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    ||||||||||||  || |||||||||||||||||||||||||||||    
T  28808522 aatatttgaatttactttcatccattatcttttttaaatgataagg 28808477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 550
Target Start/End: Original strand, 34409976 - 34410073
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgtt 550  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||  | |||||||  |  | ||||||| | || ||||||||||||| |||||    
T  34409976 atttactcttatctatttgttatatgtgttatttgtattgaaagttgagagtaattttgggaacaaaaaaagttagcctaaaagagtcaaaatatgtt 34410073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 511
Target Start/End: Complemental strand, 36926863 - 36926818
Alignment:
Q  467 tatttgttatatgtgttatt-gtattgaaagttgatggcaattttg 511  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||    
T  36926863 tatttgttatatgtgttatttgtattgaaagttgatggtaattttg 36926818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 538
Target Start/End: Complemental strand, 54983134 - 54983049
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagag 538  Q
    ||||||| |||| |||||||||||||| ||| ||| ||| ||| |||| || |||||||||| || ||||||||| ||||||||||    
T  54983134 atttactcttatctatttgttatatgtattatttgcattaaaaattgagggtaattttgcaataacaaaaagtcagcccaaaagag 54983049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 511
Target Start/End: Complemental strand, 24637877 - 24637723
Alignment:
Q  359 aatatttgaattc--tctctcatccattatcttttttaaatgataaggnnnnnnnccagacatatatagtttgttacattttgttttaannnnnnnnatt 456  Q
    |||||||||||||  |||| |||||| |||||||||||||||||||||        |||| ||||| | |||||||||||  |||| ||        |||    
T  24637877 aatatttgaattcattctcacatccactatcttttttaaatgataaggataaaaatcagagatatacaatttgttacattgggtttcaa-tatttgaatt 24637779  T
Q  457 tactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttg 511  Q
    |||| |||| |||||||| ||||||||| |||||||||||||||| || |||||||    
T  24637778 tactcttatctatttgttgtatgtgttatttgtattgaaagttgaaggtaattttg 24637723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 538
Target Start/End: Original strand, 26510440 - 26510525
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagag 538  Q
    ||||||| |||| ||||||||||||||| || ||||||||||||||||  | | ||||| ||  ||||||||||||  ||||||||    
T  26510440 atttactcttatctatttgttatatgtgatatttgtattgaaagttgagagtagttttgaaaagagaaaaagtcaattcaaaagag 26510525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 47044363 - 47044408
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    |||||||||||| |||||||||| ||| | ||||||||||||||||    
T  47044363 aatatttgaattatctctcatccgttaccatttttaaatgataagg 47044408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 37013652 - 37013684
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt 486  Q
    ||||||| |||||||||||||||||||||||||    
T  37013652 atttactcttatatatttgttatatgtgttatt 37013684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 509
Target Start/End: Original strand, 47044482 - 47044538
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattt 509  Q
    ||||||| |||||||||||||||||||| || ||||||||||| |||| || |||||    
T  47044482 atttactcttatatatttgttatatgtgctatttgtattgaaaattgagggtaattt 47044538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 31555615 - 31555660
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31555615 aatatttgaattcactctcatccattatcttttttaaatgataagg 31555660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 462 - 537
Target Start/End: Original strand, 9243872 - 9243948
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaaga 537  Q
    |||| |||||||||||||| ||||| |||||||||||||||| |||||||| ||  |||||||||||| ||||||||    
T  9243872 ttatctatttgttatatgtattatttgtattgaaagttgatgacaattttgaaaagagaaaaagtcaatccaaaaga 9243948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 557
Target Start/End: Complemental strand, 16039200 - 16039110
Alignment:
Q  468 atttgttatatgtgttatt-gtattgaaagttgatggcaatttt-gcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    ||||||||||||||||||| |||||||||||||| || |||||| | ||| | ||||||||| ||||||||| |||||| ||||||||||||    
T  16039200 atttgttatatgtgttatttgtattgaaagttgagggtaattttagaaagga-aaaaagtcagcccaaaagaatcaaaacatgttattttct 16039110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 542
Target Start/End: Original strand, 31555706 - 31555795
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaa 542  Q
    ||||||  |||| |||||||||||| ||||||| ||||||||| |||| || ||||||||| | ||||||| | | ||||||||||||||    
T  31555706 atttacacttatttatttgttatatatgttatttgtattgaaaattgaaggtaattttgcatggagaaaaaataagcccaaaagagtcaa 31555795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 538
Target Start/End: Complemental strand, 37867500 - 37867415
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagag 538  Q
    ||||||| |||| |||||||||||||||||| || ||||||||||||| || ||||||| ||  ||||||| |||  |||||||||    
T  37867500 atttactcttatttatttgttatatgtgttatttttattgaaagttgagggtaattttggaaagagaaaaaatcagaccaaaagag 37867415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 19133173 - 19133117
Alignment:
Q  474 tatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaac 529  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||  |||||||||||||    
T  19133173 tatatgtgttatttgtattgaaagttgatggtaattttgaaaagagaaaaagtcaac 19133117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 544
Target Start/End: Original strand, 38702435 - 38702518
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaa 544  Q
    |||| ||||||||| | |||||||| ||||||||| |||| |||| ||||| ||||| ||||| ||| ||||||||||| ||||    
T  38702435 ttatctatttgttacacgtgttatttgtattgaaaattgagggcatttttggaagaaaaaaaattcagcccaaaagagttaaaa 38702518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 538
Target Start/End: Complemental strand, 1110922 - 1110844
Alignment:
Q  462 ttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaatttt-gcaagaagaaaaagtcaacccaaaagag 538  Q
    |||||||||||||| |||||||| ||||||||||| |||||| || |||| | ||||| |||||| || ||||||||||    
T  1110922 ttatatatttgttagatgtgttatttgtattgaaaattgatgacatttttggaaagaaaaaaaaggcagcccaaaagag 1110844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 502
Target Start/End: Complemental strand, 7015398 - 7015356
Alignment:
Q  461 gttatatatttgttatatgtgtta-ttgtattgaaagttgatg 502  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  7015398 gttatatatttgttatatgtgttatttgtattgaaaattgatg 7015356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 557
Target Start/End: Original strand, 24836505 - 24836594
Alignment:
Q  468 atttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||||||||||||| |||| |||||||||||||| || ||| ||| ||  |||||| |||| ||| |||||| ||||| ||||||||||||    
T  24836505 atttgttatatgtgctatttgtattgaaagttgagggtaatattggaaatagaaaa-gtcatcccgaaagagacaaaacatgttattttct 24836594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 537
Target Start/End: Complemental strand, 20973003 - 20972934
Alignment:
Q  469 tttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaaga 537  Q
    ||||||| |||| ||||| ||||||||| |||| |||| ||||| ||  |||||||||||||||||||||    
T  20973003 tttgttacatgtattatttgtattgaaaattgagggcatttttggaaagagaaaaagtcaacccaaaaga 20972934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 557
Target Start/End: Original strand, 36817707 - 36817812
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttg-atggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgtta 551  Q
    ||||| ||| |||||||||||||||||| || ||||||||| ||||| | || ||||||| ||  ||||| ||||| | ||||| || ||||| ||||||    
T  36817707 atttattgtaatatatttgttatatgtgatatttgtattgagagttgtagggtaattttgaaaagagaaagagtcacctcaaaataggcaaaacatgtta 36817806  T
Q  552 ttttct 557  Q
    ||||||    
T  36817807 ttttct 36817812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 42444439 - 42444334
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtc-aaaagatgtta 551  Q
    ||||||| |||| ||||||||||||||| || |||||||||||||||| || | ||||| ||  ||||||| | | || ||||||| | |||| ||||||    
T  42444439 atttactcttatttatttgttatatgtgctatttgtattgaaagttgaaggtatttttggaaagagaaaaaatgagcctaaaagaggcaaaaacatgtta 42444340  T
Q  552 ttttct 557  Q
    ||||||    
T  42444339 ttttct 42444334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 537
Target Start/End: Complemental strand, 27590846 - 27590770
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaaga 537  Q
    |||| ||||||||| |||||||||| ||||| |||||| | |||  ||||| ||  |||||||||||||||||||||    
T  27590846 ttatctatttgttacatgtgttatttgtattaaaagtttagggcctttttgaaaagagaaaaagtcaacccaaaaga 27590770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 537
Target Start/End: Original strand, 35126151 - 35126227
Alignment:
Q  462 ttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaaga 537  Q
    |||| |||||||||||||| ||||| ||||||||| |||| | || ||||  ||  |||||||||||||||||||||    
T  35126151 ttatctatttgttatatgtattatttgtattgaaaattgaggacatttttttaaagagaaaaagtcaacccaaaaga 35126227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 454 - 557
Target Start/End: Complemental strand, 23124296 - 23124192
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| ||||||||||||||| |||| ||||||||| || | || ||||||| ||  ||||||||||| |||||||||  ||||| |||||||    
T  23124296 atttactcttatctatttgttatatgtgctatttgtattgaaaattaagggtaattttggaaagagaaaaagtcatcccaaaagaaccaaaacatgttat 23124197  T
Q  553 tttct 557  Q
    |||||    
T  23124196 tttct 23124192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 557
Target Start/End: Complemental strand, 11646364 - 11646273
Alignment:
Q  467 tatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||||||||||||||||||| ||||||||| || | || ||||||| ||  |||||||||||||||||| ||| ||||| || |||||||||    
T  11646364 tatttgttatatgtgttatttgtattgaaatttaagggtaattttgaaaagagaaaaagtcaacccaaatgaggcaaaacatattattttct 11646273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 560
Target Start/End: Complemental strand, 14426471 - 14426363
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaaga-agaaaaagtcaacccaaaagagtcaaaagatgtta 551  Q
    ||||||| |||| ||||||||| |||||||||| |||||||||||| | || ||||||  || | ||||||||||||  |||||||||||||| ||| ||    
T  14426471 atttactcttatctatttgttacatgtgttatttgtattgaaagttaagggtaatttttgaaaagagaaaaagtcaatgcaaaagagtcaaaatatgcta 14426372  T
Q  552 ttttctata 560  Q
    |||| ||||    
T  14426371 ttttatata 14426363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 535
Target Start/End: Complemental strand, 30591139 - 30591058
Alignment:
Q  454 atttactgttatatatttgttatatgtgttattgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaa 535  Q
    ||||||| |||| ||||||||||||||||||||  |||||||||||| || |||||   ||  | |||||||||||||||||    
T  30591139 atttacttttatttatttgttatatgtgttatttgattgaaagttgagggtaatttaataaagaaaaaaagtcaacccaaaa 30591058  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 14912155 - 14912229
Alignment:
Q  330 aataaatattgtgtttgttacnnnnnnnnaatatttgaattctctctcatccattatcttttttaaatgataagg 404  Q
    |||||||||||| ||||||||        ||||||||||||| |||||||||||| |||||||  ||||||||||    
T  14912155 aataaatattgtatttgttacagttttttaatatttgaattcactctcatccattttctttttagaatgataagg 14912229  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 560
Target Start/End: Complemental strand, 14415739 - 14415666
Alignment:
Q  487 gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttattttctata 560  Q
    |||||||||||| | || ||||||| ||  ||||||||||||  |||||||||||||| ||| |||||| ||||    
T  14415739 gtattgaaagttaagggtaattttgaaaagagaaaaagtcaatgcaaaagagtcaaaatatgctattttatata 14415666  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 557
Target Start/End: Original strand, 26306465 - 26306569
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| |||||||||||| ||||| ||||||| ||| |||| || ||||| | |||   ||||||||||| |||||||| |||||   |||||    
T  26306465 atttactcttatctatttgttatatttgttatttgtatttaaaattgagggtaatttagaaagggaaaaaagtcaactcaaaagagacaaaatgggttat 26306564  T
Q  553 tttct 557  Q
    |||||    
T  26306565 tttct 26306569  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 525
Target Start/End: Complemental strand, 31994382 - 31994310
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagt 525  Q
    ||||||| |||| |||||||||||||||||||| ||||| |||||||| |  ||||||| ||  |||||||||    
T  31994382 atttacttttatttatttgttatatgtgttattagtattaaaagttgaggataattttgaaaagagaaaaagt 31994310  T

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Target: scaffold0154 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 544
Target Start/End: Original strand, 32827 - 32918
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaa 544  Q
    ||||||| |||| ||||| |||||||||||||| ||||||||||||||||| ||||||  ||  || |||| |||||||||||||| |||||    
T  32827 atttactcttatctatttattatatgtgttatttgtattgaaagttgatggtaattttagaaagagtaaaaatcaacccaaaagagccaaaa 32918  T

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Target: scaffold0013 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 101378 - 101294
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaaga 537  Q
    ||||||| |||| |||||||||||||||||| ||||||||| ||||||  | ||||||| ||||| ||||||||| || ||||||    
T  101378 atttactattatctatttgttatatgtgttatttgtattgatagttgagagtaattttggaagaaaaaaaagtcagcctaaaaga 101294  T

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Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 6631 - 6588
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaatgataa 402  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  6631 aatatttgaattcactctcatgcattatcttttttaaatgataa 6588  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 72753 - 72715
Alignment:
Q  359 aatatttgaattctctctcatccattatcttttttaaat 397  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  72753 aatatttgaattcactctcatccattatctttttcaaat 72715  T

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Target: scaffold0526 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 557
Target Start/End: Original strand, 9436 - 9540
Alignment:
Q  454 atttactgttatatatttgttatatgtgttatt-gtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| ||||||||||||| | | || |||||||||||| |  | ||||||  ||  |||||||||||||| ||||| | ||||| |||||||    
T  9436 atttacttttatctatttgttatatgcgctgtttgtattgaaagttaagagtaattttagaaagagaaaaagtcaaccaaaaagtggcaaaacatgttat 9535  T
Q  553 tttct 557  Q
    |||||    
T  9536 tttct 9540  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 557
Target Start/End: Original strand, 43326 - 43430
Alignment:
Q  454 atttactgttatatatttgttatatgtgtta-ttgtattgaaagttgatggcaattttgcaagaagaaaaagtcaacccaaaagagtcaaaagatgttat 552  Q
    ||||||| |||| ||||||||||||| |||| ||| |||||||||| |||| ||||||| ||   ||||||||||   |||||||| ||||| ||  |||    
T  43326 atttactcttatttatttgttatatgcgttatttgcattgaaagtttatggtaattttggaaagggaaaaagtcagtgcaaaagagacaaaacattctat 43425  T
Q  553 tttct 557  Q
    |||||    
T  43426 tttct 43430  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 557
Target Start/End: Complemental strand, 15646 - 15606
Alignment:
Q  517 agaaaaagtcaacccaaaagagtcaaaagatgttattttct 557  Q
    |||||||||||| | ||||||||||||| ||||||||||||    
T  15646 agaaaaagtcaatcaaaaagagtcaaaacatgttattttct 15606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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