View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16704_high_16 (Length: 212)

Name: NF16704_high_16
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16704_high_16
NF16704_high_16
[»] chr8 (25 HSPs)
chr8 (1-212)||(4759915-4760126)
chr8 (2-212)||(36979423-36979633)
chr8 (1-212)||(30655692-30655903)
chr8 (1-212)||(33037648-33037857)
chr8 (1-212)||(10688980-10689194)
chr8 (1-212)||(18870401-18870613)
chr8 (1-212)||(18853007-18853219)
chr8 (1-212)||(1261797-1262005)
chr8 (1-212)||(6311343-6311555)
chr8 (1-212)||(31071072-31071280)
chr8 (1-212)||(26287947-26288144)
chr8 (1-212)||(26301204-26301401)
chr8 (1-212)||(26313198-26313395)
chr8 (3-212)||(19175601-19175805)
chr8 (3-212)||(7412387-7412590)
chr8 (3-212)||(4456074-4456278)
chr8 (77-212)||(7289831-7289965)
chr8 (77-212)||(25328184-25328317)
chr8 (125-212)||(19752359-19752445)
chr8 (79-212)||(23799496-23799628)
chr8 (3-212)||(26403076-26403281)
chr8 (160-212)||(6127267-6127320)
chr8 (171-212)||(6813729-6813770)
chr8 (161-212)||(10684252-10684303)
chr8 (161-212)||(35745437-35745488)
[»] chr2 (33 HSPs)
chr2 (1-212)||(14291534-14291745)
chr2 (1-212)||(9296242-9296452)
chr2 (1-212)||(11098767-11098978)
chr2 (1-212)||(3491796-3492004)
chr2 (41-212)||(25398541-25398711)
chr2 (41-212)||(25403679-25403849)
chr2 (41-212)||(25407668-25407838)
chr2 (3-212)||(40738888-40739084)
chr2 (3-212)||(28259024-28259228)
chr2 (3-208)||(36757609-36757809)
chr2 (3-205)||(23078318-23078514)
chr2 (77-212)||(39811894-39812027)
chr2 (78-212)||(32246834-32246966)
chr2 (3-212)||(8040106-8040314)
chr2 (54-212)||(8390046-8390201)
chr2 (54-205)||(10707149-10707296)
chr2 (79-212)||(42039588-42039720)
chr2 (115-212)||(44312567-44312663)
chr2 (3-212)||(34388904-34389101)
chr2 (130-212)||(21629989-21630070)
chr2 (42-212)||(13569374-13569542)
chr2 (160-212)||(10445442-10445495)
chr2 (160-212)||(34682332-34682385)
chr2 (173-212)||(31056090-31056129)
chr2 (160-212)||(2869691-2869744)
chr2 (160-208)||(16940207-16940256)
chr2 (160-208)||(17010872-17010921)
chr2 (160-212)||(17865249-17865302)
chr2 (160-212)||(20522266-20522319)
chr2 (171-212)||(27149304-27149345)
chr2 (160-212)||(33528619-33528672)
chr2 (161-212)||(19344467-19344518)
chr2 (161-212)||(19349325-19349376)
[»] chr3 (35 HSPs)
chr3 (1-212)||(2671426-2671637)
chr3 (1-212)||(8738903-8739114)
chr3 (1-212)||(9091141-9091352)
chr3 (1-212)||(7167290-7167501)
chr3 (1-212)||(40372636-40372846)
chr3 (1-212)||(8477408-8477621)
chr3 (1-212)||(28501537-28501748)
chr3 (1-212)||(28503704-28503915)
chr3 (2-212)||(32143367-32143574)
chr3 (3-212)||(26928435-26928642)
chr3 (1-210)||(1305996-1306202)
chr3 (3-212)||(27453004-27453210)
chr3 (3-212)||(27974788-27974993)
chr3 (3-212)||(33386511-33386707)
chr3 (3-212)||(16264396-16264599)
chr3 (3-212)||(6794551-6794754)
chr3 (3-212)||(27986292-27986487)
chr3 (77-212)||(22173100-22173234)
chr3 (3-209)||(35925529-35925728)
chr3 (3-212)||(8370325-8370527)
chr3 (3-210)||(36029141-36029343)
chr3 (3-212)||(21711269-21711472)
chr3 (3-212)||(40592618-40592823)
chr3 (3-212)||(3715838-3716043)
chr3 (162-212)||(18656481-18656530)
chr3 (160-212)||(1736293-1736346)
chr3 (160-212)||(18552871-18552924)
chr3 (160-212)||(48438260-48438313)
chr3 (160-212)||(4386915-4386968)
chr3 (160-212)||(26299034-26299087)
chr3 (160-212)||(40844697-40844750)
chr3 (161-212)||(2672919-2672970)
chr3 (161-212)||(2677075-2677126)
chr3 (161-212)||(8512263-8512314)
chr3 (161-212)||(8517143-8517194)
[»] chr4 (30 HSPs)
chr4 (1-212)||(24741986-24742197)
chr4 (1-212)||(29760687-29760897)
chr4 (1-212)||(28468381-28468580)
chr4 (3-212)||(31985480-31985685)
chr4 (3-212)||(5396518-5396722)
chr4 (77-212)||(51520503-51520637)
chr4 (77-212)||(9224312-9224446)
chr4 (77-212)||(9229099-9229233)
chr4 (3-212)||(16623140-16623344)
chr4 (42-211)||(5147724-5147891)
chr4 (78-212)||(45347723-45347856)
chr4 (78-212)||(45357203-45357335)
chr4 (3-212)||(3777595-3777799)
chr4 (77-212)||(3814070-3814202)
chr4 (42-212)||(5143305-5143473)
chr4 (160-212)||(36315228-36315280)
chr4 (160-212)||(36329437-36329489)
chr4 (42-149)||(8689380-8689485)
chr4 (3-103)||(16628719-16628815)
chr4 (125-212)||(56146664-56146750)
chr4 (162-212)||(5732711-5732760)
chr4 (160-212)||(10047425-10047478)
chr4 (160-208)||(16630678-16630727)
chr4 (160-212)||(39246040-39246093)
chr4 (173-212)||(6743427-6743466)
chr4 (173-212)||(24333855-24333894)
chr4 (173-212)||(38152451-38152490)
chr4 (174-212)||(5269204-5269242)
chr4 (160-212)||(3796517-3796570)
chr4 (160-212)||(5112283-5112336)
[»] chr7 (30 HSPs)
chr7 (1-212)||(20357387-20357598)
chr7 (1-212)||(2058011-2058225)
chr7 (1-212)||(1533284-1533495)
chr7 (1-212)||(21639854-21640062)
chr7 (1-212)||(21646052-21646260)
chr7 (1-212)||(18413685-18413892)
chr7 (1-212)||(18408809-18409016)
chr7 (3-212)||(2479382-2479586)
chr7 (3-212)||(21983330-21983536)
chr7 (76-207)||(12406382-12406512)
chr7 (42-212)||(44848568-44848735)
chr7 (3-212)||(29159849-29160055)
chr7 (77-208)||(12396961-12397091)
chr7 (77-212)||(24024232-24024365)
chr7 (77-212)||(31109489-31109622)
chr7 (113-212)||(2580436-2580533)
chr7 (125-212)||(9189973-9190059)
chr7 (3-149)||(47263773-47263916)
chr7 (3-212)||(21988952-21989158)
chr7 (162-212)||(19992359-19992408)
chr7 (160-212)||(55993-56046)
chr7 (160-212)||(2647694-2647747)
chr7 (160-212)||(46516308-46516361)
chr7 (160-212)||(49091707-49091760)
chr7 (173-212)||(4866776-4866814)
chr7 (177-212)||(47263722-47263757)
chr7 (160-212)||(33332448-33332501)
chr7 (160-212)||(20284135-20284187)
chr7 (161-212)||(24261311-24261362)
chr7 (161-212)||(24266190-24266241)
[»] chr6 (21 HSPs)
chr6 (1-212)||(5674610-5674821)
chr6 (3-212)||(22709064-22709260)
chr6 (3-212)||(21356082-21356287)
chr6 (77-212)||(11857020-11857154)
chr6 (3-212)||(5757325-5757529)
chr6 (77-212)||(22010602-22010736)
chr6 (77-212)||(14737482-14737615)
chr6 (77-212)||(14742342-14742475)
chr6 (77-212)||(28184551-28184684)
chr6 (78-212)||(28155477-28155608)
chr6 (160-212)||(31086471-31086524)
chr6 (3-212)||(5572090-5572292)
chr6 (160-212)||(22963745-22963798)
chr6 (160-212)||(23824595-23824648)
chr6 (173-212)||(4630000-4630039)
chr6 (173-212)||(10077177-10077216)
chr6 (161-212)||(6005463-6005514)
chr6 (161-212)||(16838790-16838841)
chr6 (160-211)||(21801342-21801394)
chr6 (161-212)||(33330433-33330484)
chr6 (161-212)||(33335930-33335981)
[»] chr1 (24 HSPs)
chr1 (1-212)||(24787204-24787415)
chr1 (1-212)||(24202612-24202820)
chr1 (2-212)||(19361276-19361483)
chr1 (2-212)||(19379916-19380123)
chr1 (2-212)||(19358687-19358894)
chr1 (1-149)||(19366151-19366297)
chr1 (3-212)||(13604469-13604674)
chr1 (3-212)||(3281754-3281957)
chr1 (3-212)||(26644745-26644948)
chr1 (2-212)||(21536416-21536620)
chr1 (77-212)||(41390627-41390760)
chr1 (77-212)||(41398282-41398415)
chr1 (42-212)||(37069816-37069980)
chr1 (79-212)||(47703855-47703987)
chr1 (125-212)||(32889485-32889571)
chr1 (160-212)||(27104370-27104423)
chr1 (162-212)||(25445079-25445128)
chr1 (125-212)||(9476307-9476393)
chr1 (160-212)||(16124514-16124567)
chr1 (160-212)||(19072974-19073027)
chr1 (160-212)||(19120864-19120917)
chr1 (160-212)||(29651857-29651910)
chr1 (161-212)||(43988452-43988503)
chr1 (160-212)||(47098823-47098875)
[»] chr5 (33 HSPs)
chr5 (1-212)||(31180260-31180470)
chr5 (1-212)||(30631452-30631663)
chr5 (1-212)||(24135894-24136103)
chr5 (1-212)||(38219444-38219652)
chr5 (1-212)||(35387708-35387916)
chr5 (61-212)||(38192219-38192369)
chr5 (3-212)||(15464578-15464784)
chr5 (3-212)||(36932195-36932401)
chr5 (3-212)||(9353179-9353383)
chr5 (3-212)||(14520276-14520480)
chr5 (77-212)||(1457067-1457201)
chr5 (77-212)||(27445016-27445150)
chr5 (77-212)||(27449860-27449994)
chr5 (77-212)||(43592325-43592459)
chr5 (77-212)||(43598770-43598904)
chr5 (77-212)||(43604262-43604396)
chr5 (77-212)||(43609754-43609888)
chr5 (3-212)||(11916819-11917023)
chr5 (80-212)||(3880345-3880476)
chr5 (3-212)||(12084024-12084226)
chr5 (3-212)||(10281797-10282002)
chr5 (77-212)||(15044732-15044865)
chr5 (160-212)||(19588792-19588845)
chr5 (163-212)||(37556613-37556661)
chr5 (163-212)||(37561435-37561483)
chr5 (82-212)||(28807485-28807611)
chr5 (125-205)||(31300561-31300640)
chr5 (161-212)||(2785421-2785472)
chr5 (160-212)||(28832305-28832357)
chr5 (161-212)||(31396981-31397032)
chr5 (161-212)||(31401838-31401889)
chr5 (161-212)||(33768225-33768276)
chr5 (161-212)||(33791362-33791413)
[»] scaffold0188 (2 HSPs)
scaffold0188 (1-212)||(17795-18003)
scaffold0188 (1-212)||(23888-24096)
[»] scaffold0140 (1 HSPs)
scaffold0140 (3-212)||(8264-8470)
[»] scaffold0006 (2 HSPs)
scaffold0006 (3-212)||(133126-133331)
scaffold0006 (173-210)||(2540-2577)
[»] scaffold0087 (2 HSPs)
scaffold0087 (3-212)||(43808-44012)
scaffold0087 (2-212)||(36678-36883)
[»] scaffold0135 (1 HSPs)
scaffold0135 (77-212)||(34967-35101)
[»] scaffold0355 (1 HSPs)
scaffold0355 (77-212)||(9549-9681)
[»] scaffold0148 (1 HSPs)
scaffold0148 (125-212)||(10775-10861)
[»] scaffold0036 (1 HSPs)
scaffold0036 (3-212)||(85729-85933)
[»] scaffold0098 (1 HSPs)
scaffold0098 (174-212)||(45299-45337)
[»] scaffold0176 (1 HSPs)
scaffold0176 (160-212)||(17309-17362)
[»] scaffold0197 (1 HSPs)
scaffold0197 (161-212)||(14297-14348)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4759915 - 4760126
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4759915 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 4760014  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  4760015 ggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattg 4760114  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  4760115 gagagctgctct 4760126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 36979633 - 36979423
Alignment:
Q  2 aaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36979633 aaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtg 36979534  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    |||||||||  | ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  36979533 gggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattgg 36979434  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  36979433 agagctgctct 36979423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30655903 - 30655692
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30655903 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 30655804  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||  | ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  30655803 ggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattagattg 30655704  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  30655703 gagagctgctct 30655692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 33037648 - 33037857
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33037648 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttt-agggttcatattgtgagagt 33037746  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||    
T  33037747 ggggaaacacatatgggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaaccctttgtaacactttc-tcatattggattg 33037845  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  33037846 gagagctgctct 33037857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 10688980 - 10689194
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttgga--aggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgaga 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10688980 aaaaacattgtaatcaccttgggtagtgaggagttcattagttgggggaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgaga 10689079  T
Q  99 gtggggaaaca-catatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattgga 197  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  10689080 gtggggaaacaacatatgggtagaatctagggcttgttcttgtgtaagcttgaaggctattgtttcttgtaaccctctgtaacactttcatcatattgga 10689179  T
Q  198 ttggagagctgctct 212  Q
    |||||||||||||||    
T  10689180 ttggagagctgctct 10689194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 18870401 - 18870613
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18870401 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 18870500  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcc-tttgtaacactttcatcatattggatt 199  Q
    ||||||| ||  | ||||| ||||||||| |||||||||||||||||||||  |||||||||||||||| || |||||||||||||||| ||||||||||    
T  18870501 ggggaaataccaaagggtagaatctagggtttgttcttgtgtaagcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggatt 18870600  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  18870601 ggagagctgctct 18870613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 18853007 - 18853219
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18853007 aaaaatattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 18853106  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcc-tttgtaacactttcatcatattggatt 199  Q
    ||||||| ||  | ||||| ||||||||| |||||||||||||||||||||  |||||||||||||||| || |||||||||||||||| ||||||||||    
T  18853107 ggggaaataccaaagggtaaaatctagggtttgttcttgtgtaagcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggatt 18853206  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  18853207 ggagagctgctct 18853219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1261797 - 1262005
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||| | ||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1261797 aaaaacattgtaatcaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 1261894  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| |||||||| ||||| |||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||    
T  1261895 ggggaaacacaaatgggtagaatctaggtcttgtacttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattg 1261993  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  1261994 gagagctgctct 1262005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 6311555 - 6311343
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctc--ttttagggttcatattgtgaga 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||| ||||||||    
T  6311555 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatcaaaagcttcctctagtgacttctcttttttagggttcatcttgtgaga 6311456  T
Q  99 gtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattgga 197  Q
    ||||||||||||  | ||||| ||||||||| ||| |||||||| |||||||||| |||  ||||||||||| | |||||||||||||| ||||||||||    
T  6311455 gtggggaaacaccaaagggtagaatctagggtttg-tcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttc-tcatattgga 6311358  T
Q  198 ttggagagctgctct 212  Q
    |||||||||||||||    
T  6311357 ttggagagctgctct 6311343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31071072 - 31071280
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | ||||  | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  31071072 aaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcttaagcttcctcttgtgtcttctcttttagggttcatattgtgagagt 31071169  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| || ||||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||    
T  31071170 ggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattg 31071268  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  31071269 gagagctgctct 31071280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26288144 - 26287947
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26288144 aaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagt 26288047  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    |||| |||||| ||||||| || ||||| |||||||||||||||||||| |  ||||| ||||          ||||||||||||||||||| |||||||    
T  26288046 gggg-aacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttc----------ttgtaacactttcatcatagtggattg 26287959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26301401 - 26301204
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26301401 aaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagt 26301304  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    |||| |||||| ||||||| || ||||| |||||||||||||||||||| |  ||||| ||||          ||||||||||||||||||| |||||||    
T  26301303 gggg-aacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttc----------ttgtaacactttcatcatagtggattg 26301216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26313395 - 26313198
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26313395 aaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagt 26313298  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    |||| |||||| ||||||| || ||||| |||||||||||||||||||| |  ||||| ||||          ||||||||||||||||||| |||||||    
T  26313297 gggg-aacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttc----------ttgtaacactttcatcatagtggattg 26313210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 19175601 - 19175805
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | |||| || ||||||||||| |||| ||||| | ||||||||||||  ||||||||| |||| |||||||    
T  19175601 aaacattgtaaacaccttgggtagtgag-atttcacta-ttggaaggatcaaaagtttccttttgtgtcttctctt--agggttcatcattgagagagtg 19175696  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||| ||| ||  |||| |||||||||||||||||||| || ||||| ||||||||||  ||||||||||||||||||||| ||||||||    
T  19175697 gg-aaacacaaatgtgtagaagttaggtcttgttcttgtgtaagcttgcaggctatt-tttcttgtaactctttgtaacactttcatcatagtggattgg 19175794  T
Q  202 agagctgctct 212  Q
    |||| ||||||    
T  19175795 agagttgctct 19175805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 7412590 - 7412387
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||| ||||||| |||||||||| |  |||||||||||  ||||||||| |||| |||||||    
T  7412590 aaacattgtaaacaccttgggtagtgag-atttcacca-ttgaaaggatcaaaagcttccttttatgtcttctctt--agggttcattattgagagagtg 7412495  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||||||| ||  |||| |||||||||||||||||||| |   ||||  |||||||||  ||||||||||||||||||||| ||||||||    
T  7412494 gg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagttatt--ttcttgtaactctttgtaacactttcatcatagtggattgg 7412398  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  7412397 agagctgctct 7412387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 4456278 - 4456074
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | || |||||||| |||||||||| | ||||||||||||| ||||||||| |||| |||||||    
T  4456278 aaacattgtaaacaccttgggtagtgag-atttcacca-ttagaaggatcaaaagcttccttttgtgtcttctcttt-agggttcatcattgagagagtg 4456182  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || || |||| ||||||| ||  || | ||||||||||||||||||||    |||||  |||||||||  ||||||||||||||||||||| ||||||||    
T  4456181 ggtaa-cacaaatgggtagaaattatgtcttgttcttgtgtaagcttgccagctatt--ttcttgtaactctttgtaacactttcatcatagtggattgg 4456085  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  4456084 agagctgctct 4456074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 7289831 - 7289965
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||||||||||||||||||||  | ||||| ||| ||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  7289831 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatatagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 7289929  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7289930 gtaacactttc-tcatattggattggagagctgctct 7289965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 25328184 - 25328317
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||| ||||||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  |  |||||||| | |||    
T  25328184 ttttagggttcatgttgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 25328281  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  25328282 gtaacactttc-tcatattggattggagagctgctct 25328317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 19752359 - 19752445
Alignment:
Q  125 tagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||| |||||||||||||||||||| |  ||||| ||||||||||  | |||||||||||||||| || |||||||||||||||||||    
T  19752359 taggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaactcattgtaacactttcatcttagtggattggagagctgctct 19752445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 23799496 - 23799628
Alignment:
Q  79 ttagggttcatattgtgagagtggg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttg 176  Q
    ||||| |||||||||||| |||||| || ||| | ||||||| ||  |||| |||||||||||||||||||| |  ||| |  ||||||||| || ||||    
T  23799496 ttaggattcatattgtgacagtgggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaat--ttcttgtaactcttttg 23799592  T
Q  177 taacactttcatcatattggattggagagctgctct 212  Q
    |||||||||||||||| |||||||||| ||||||||    
T  23799593 taacactttcatcatagtggattggagggctgctct 23799628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 26403076 - 26403281
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| ||| ||||||| | |||| ||||||| |  | |||||||||||||||||    
T  26403076 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaaagcttccttttgtgttttctcttat--gattcatattgtgagagtg 26403171  T
Q  102 gg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggatt 199  Q
     | || ||| | ||||||| ||  |||| |||||||||||| ||||||| |  ||| |  ||| | ||| || |||||||||||||||||||| ||||||    
T  26403172 agtgacacaaa-atgggtagaaattaggtcttgttcttgtgcaagcttgtaagctaat--ttcctataactcttttgtaacactttcatcatagtggatt 26403268  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  26403269 ggagagctgctct 26403281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 6127320 - 6127267
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  6127320 tttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctct 6127267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 6813770 - 6813729
Alignment:
Q  171 cctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||  |||||||||| ||||||||||||||||||||||    
T  6813770 cctttgtgtcactttcatcttattggattggagagctgctct 6813729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 10684252 - 10684303
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  10684252 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 10684303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 35745488 - 35745437
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  35745488 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 35745437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 14291745 - 14291534
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14291745 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 14291646  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  14291645 ggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattg 14291546  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  14291545 gagagctgctct 14291534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 9296242 - 9296452
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9296242 aaaaacattgtaatcaccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 9296340  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  9296341 ggggaaacacatatgggtagaatctagggcttgttcttgtataagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattg 9296440  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  9296441 gagagctgctct 9296452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 11098767 - 11098978
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098767 aaaaacattgtaatcaccttgggtagtgaggagtacattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 11098866  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||  | ||||| ||||||||| ||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  11098867 ggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattg 11098966  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  11098967 gagagctgctct 11098978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 3492004 - 3491796
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | | ||  | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  3492004 aaaaacattgtaaacaccttgggtagtgag-attccacca-ttggaaggatcttaagcttcctcttgtgtcttctcttttagggttcatattgtgagagt 3491907  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||    
T  3491906 ggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattg 3491808  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  3491807 gagagctgctct 3491796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 25398711 - 25398541
Alignment:
Q  41 gttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgt 140  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||| |||||||||||    
T  25398711 gttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgt 25398612  T
Q  141 gtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  25398611 gtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctct 25398541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 25403849 - 25403679
Alignment:
Q  41 gttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgt 140  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||| |||||||||||    
T  25403849 gttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgt 25403750  T
Q  141 gtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  25403749 gtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctct 25403679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 25407838 - 25407668
Alignment:
Q  41 gttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgt 140  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||| |||||||||||    
T  25407838 gttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtggagaaacacaaatgggtagaaactaggacttgttcttgt 25407739  T
Q  141 gtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  25407738 gtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctct 25407668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 40739084 - 40738888
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| ||||||||||| |||| | ||||  | ||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||||    
T  40739084 aaacattgtaaacaccttgggtaatgag-atttcacca-ttggaaggatcaaaagcttactattgtgtcttctcttttagggttcatattgtgagagtgg 40738987  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    ||||||||| ||||||| || ||| | |||||||||||||||||||| |  ||||| ||||          ||||||||||||||||||| |||||||||    
T  40738986 ggaaacacaaatgggtagaaactaagacttgttcttgtgtaagcttgcaagctatt-tttc----------ttgtaacactttcatcatagtggattgga 40738898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 28259024 - 28259228
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| || ||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||| |||| |||| |||| |||||||    
T  28259024 aaacattgtaaacatcttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttt-aggggtcattattgagagagtg 28259120  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||||||| ||  |||  |||||||||||||||||||| |  |||||  |||||||||  ||||||||||||||||||||| ||||||||    
T  28259121 gg-aaacacaaatgggtagaaattagatcttgttcttgtgtaagcttgcaagctatt--ttcttgtaactctttgtaacactttcatcatagtggattgg 28259217  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  28259218 agagctgctct 28259228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 36757609 - 36757809
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||| ||||||||| |||| |||||||    
T  36757609 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttt-agggttcatcattgagagagtg 36757705  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || || |||| ||||||| ||  ||||  |||||||||||||||||||||  || ||  ||||| |||  ||||| ||||||||||||||| ||||||||    
T  36757706 ggtaa-cacaaatgggtagaaattaggttttgttcttgtgtaagcttgaaagctttt--ttcttataactctttgaaacactttcatcatactggattgg 36757802  T
Q  202 agagctg 208  Q
    |||||||    
T  36757803 agagctg 36757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 23078318 - 23078514
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtg- 101  Q
    ||||||||||| |||||||||||||||| | ||||| | ||||||||||| |||||||||| | ||||||||||||  |||||||||  | ||||||||     
T  23078318 aaacattgtaaacaccttgggtagtgag-atttcatca-ttggaaggatcaaaagcttccttttgtgtcttctctt--agggttcatcat-tgagagtgt 23078412  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    ||| |||||| ||||||| ||  || | |||||||||||||||||||| |  |||||  |||||||||  |||| |||||||||||||||| ||||||||    
T  23078413 gggtaacacaaatgggtagaaattaagtcttgttcttgtgtaagcttgcaagctatt--ttcttgtaactctttctaacactttcatcatagtggattgg 23078510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 39811894 - 39812027
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  |  |||||||| | |||    
T  39811894 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 39811991  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  39811992 gtaacactttc-tcatattggattggagagctgctct 39812027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 32246966 - 32246834
Alignment:
Q  78 tttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatcctttg 176  Q
    ||||||||||||| |||||||||||| ||| ||  | ||||||||||||||| |||||| ||||||| |||||||  |||  ||  ||||||| | ||||    
T  32246966 tttagggttcatagtgtgagagtgggaaaataccaaagggtataatctagggtttgttcatgtgtaaagcttgaaagctagagt--cttgtaaccttttg 32246869  T
Q  177 taacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| |||||||||||||||||||||||||    
T  32246868 taacactttc-tcatattggattggagagctgctct 32246834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 8040314 - 8040106
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| ||| ||||||| |  ||| || ||| ||||| |||||||||||||||||    
T  8040314 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaaagcttccttttatgtttt-tctcttaggattcatattgtgagagtg 8040218  T
Q  102 gg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa---tcctttgtaacactttcatcatattgga 197  Q
    || || ||| | ||||||| ||  |||| |||||||||||||||||||| |  ||| |  |||||||||   || |||||||||||||||||||| ||||    
T  8040217 ggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaat--ttcttgtaactctcttttgtaacactttcatcatagtgga 8040121  T
Q  198 ttggagagctgctct 212  Q
    |||||||||||||||    
T  8040120 ttggagagctgctct 8040106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 8390046 - 8390201
Alignment:
Q  54 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaag 152  Q
    |||||||||||| |||| |||||||  ||| ||||||||||||||||||| || ||| | ||||||| ||  |||| |||||||||||| ||||||| |     
T  8390046 aaagcttcctcttgtgttttctctt--aggattcatattgtgagagtgggtgacacaaa-atgggtagaaattaggtcttgttcttgtgcaagcttgtaa 8390142  T
Q  153 actattgtttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
     ||| |  ||||||||| || ||| |||||||||||||||| |||||||||||||||||||    
T  8390143 gctaat--ttcttgtaactcttttttaacactttcatcatagtggattggagagctgctct 8390201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 10707149 - 10707296
Alignment:
Q  54 aaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaaga 153  Q
    |||||||||| | |||| |||||||  ||| |||||||||||||||||||  | |||| ||||||| ||  |||| |||||||||||||||||||| |      
T  10707149 aaagcttccttttgtgttttctctt--aggattcatattgtgagagtgggtga-cacagatgggtagaaattaggtcttgttcttgtgtaagcttgtaag 10707245  T
Q  154 ctattgtttcttgtaa-tcctttgtaacactttcatcatattggattggagag 205  Q
    |||   |||||||||| || |||||||||||||||||||| ||||||||||||    
T  10707246 cta--atttcttgtaactcttttgtaacactttcatcatagtggattggagag 10707296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 42039588 - 42039720
Alignment:
Q  79 ttagggttcatattgtgagagtggg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgt 177  Q
    ||||| ||||||||||||||||||| || ||| | ||||||| ||  |||| |||||| ||||||||||||| |  ||| | ||||||||||  ||| ||    
T  42039588 ttaggattcatattgtgagagtgggtgacacaaa-atgggtagaaattaggtcttgtttttgtgtaagcttgcaagctaat-tttcttgtaactcttcgt 42039685  T
Q  178 aacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||||||| |||||| ||||||||||||    
T  42039686 aacactttcatcatagtggattagagagctgctct 42039720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 44312567 - 44312663
Alignment:
Q  115 gggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||| ||||||||| |||||| ||||||| |||||||| |||  ||| ||||||| | |||||||||||||| |||||||||||||||||||||||||    
T  44312567 gggtagaatctagggtttgttcatgtgtaaagcttgaaggctagagtt-cttgtaaccttttgtaacactttc-tcatattggattggagagctgctct 44312663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 34389101 - 34388904
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| ||| ||||||| | |||| |||||||  ||| |||||||||||||||||    
T  34389101 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaaagcttccttttgtgttttctctt--aggattcatattgtgagagtg 34389006  T
Q  102 gg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggatt 199  Q
    || || ||| | ||||||| ||  |||| ||||||||||||||||||  ||        |||||||||| || |||||||||||||||||||| ||||||    
T  34389005 ggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagct--aa--------tttcttgtaactcttttgtaacactttcatcatagtggatt 34388917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 21630070 - 21629989
Alignment:
Q  130 cttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||||||||||||  | ||||   |||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  21630070 cttgttcttgtgtaagcttataaacta--atttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctct 21629989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 13569542 - 13569374
Alignment:
Q  42 ttggaaggatctaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtataatctagggcttgttcttg 139  Q
    ||||||||||| ||| ||||||| | |||| |||||||  ||| ||||||||||||||||||| || | ||| | ||||| ||  |||| ||||||||||    
T  13569542 ttggaaggatcaaaaagcttccttttgtgttttctctt--aggattcatattgtgagagtgggtgacaaacaaa-gggtagaaattaggtcttgttcttg 13569446  T
Q  140 tgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||| |||  |  ||| |  ||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  13569445 tgtaaacttataagctaat--ttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctct 13569374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 10445442 - 10445495
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||| ||| |||||||||||||||||||    
T  10445442 tttcttgtaactcttttgtaacactttcataatagtggattggagagctgctct 10445495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 34682332 - 34682385
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||| ||| |||||||||||||||||||    
T  34682332 tttcttgtaactcttttgtaacactttcattatagtggattggagagctgctct 34682385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 31056129 - 31056090
Alignment:
Q  173 tttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  31056129 tttgtaacactttcatcttagtggattggagagctgctct 31056090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 2869691 - 2869744
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| ||||||||| |||||||||| || |||||||||||||| ||||    
T  2869691 tttcttgtaactcctttgtatcactttcatcttagtggattggagagctactct 2869744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 16940207 - 16940256
Alignment:
Q  160 tttcttgtaatccttt-gtaacactttcatcatattggattggagagctg 208  Q
    ||||||||||| |||| ||||||||||||||||| |||||||||| ||||    
T  16940207 tttcttgtaattcttttgtaacactttcatcatagtggattggagggctg 16940256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 17010872 - 17010921
Alignment:
Q  160 tttcttgtaatccttt-gtaacactttcatcatattggattggagagctg 208  Q
    ||||||||||| |||| ||||||||||||||||| |||||||||| ||||    
T  17010872 tttcttgtaattcttttgtaacactttcatcatagtggattggagggctg 17010921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 17865302 - 17865249
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| | ||||||    
T  17865302 tttcttgtaactcttttgtaacactttcatcatagtggattggagggttgctct 17865249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 20522319 - 20522266
Alignment:
Q  160 tttcttgtaatccttt-gtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||| | ||||||    
T  20522319 tttcttgtaacccttttgtaacactttcatcatagtggattggagggttgctct 20522266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 27149304 - 27149345
Alignment:
Q  171 cctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  27149304 cctttgtatcactttcattatagtggattggagagctgctct 27149345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 33528619 - 33528672
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| | ||||||    
T  33528619 tttcttgtaactcttttgtaacactttcatcatagtggattggagggttgctct 33528672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 19344518 - 19344467
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  19344518 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 19344467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 19349376 - 19349325
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  19349376 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 19349325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 2671426 - 2671637
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2671426 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 2671525  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2671526 ggggaaacacatatgggtagaatctagggcttggtcttgtgtaagcttgcaatctattgtttcttgtaaccctttgtaacactttcatcatattggattg 2671625  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  2671626 gagagctgctct 2671637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 8738903 - 8739114
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8738903 aaaaacattgtaatcaccttgggtagtgaggagttcattagttgaaaggatctaaagcttcctctagtgtcttctcttctagggttcatattgtgagagt 8739002  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8739003 ggggaaatacatatgggtagaatctagggattgttcttgtgtaagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattg 8739102  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  8739103 gagagctgctct 8739114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 9091141 - 9091352
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9091141 aaaaacattgtaatcaccttgggtagtgaggagttcattagttgaaaggatctaaagcttcctctagtgtcttctcttctagggttcatattgtgagagt 9091240  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  9091241 ggggaaatacatatgggtagaatctagggattgttcttgtgtaagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattg 9091340  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  9091341 gagagctgctct 9091352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 7167501 - 7167290
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7167501 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 7167402  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||| ||  | ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  7167401 ggggaaataccaaagggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattg 7167302  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  7167301 gagagctgctct 7167290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 40372636 - 40372846
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40372636 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattatgagagt 40372735  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |  ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  40372736 ggggaaacacatatgggtagaatctagggcttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatattggattg 40372834  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  40372835 gagagctgctct 40372846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 8477621 - 8477408
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8477621 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 8477522  T
Q  101 -ggggaaacacatatgggtataatctagggcttg-ttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggat 198  Q
     ||||||||||  | ||||| |||||||| |||| || ||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||    
T  8477521 gggggaaacaccaaagggtagaatctaggtcttgtttattgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggat 8477422  T
Q  199 tggagagctgctct 212  Q
    ||||||||||||||    
T  8477421 tggagagctgctct 8477408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 28501537 - 28501748
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28501537 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgacttctcttttagggttcatattgtgagagt 28501636  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggatt 199  Q
    ||||||||||  | ||||| ||||||||| || ||||||||| |||||||||| |||  ||||||||||| | |||||||||||||| ||||||||||||    
T  28501637 ggggaaacaccaaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttc-tcatattggatt 28501735  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  28501736 ggagagctgctct 28501748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 28503704 - 28503915
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28503704 aaaaatattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgacttctcttttagggttcatattgtgagagt 28503803  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggatt 199  Q
    ||||||||||  | ||||| ||||||||| || ||||||||| |||||||||| |||  ||||||||||| | |||||||||||||| ||||||||||||    
T  28503804 ggggaaacaccaaagggtagaatctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttc-tcatattggatt 28503902  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  28503903 ggagagctgctct 28503915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 32143574 - 32143367
Alignment:
Q  2 aaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    |||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  32143574 aaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtg 32143477  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  32143476 gggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattgg 32143378  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  32143377 agagctgctct 32143367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 26928435 - 26928642
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| ||||||||||| |||| | ||||  | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26928435 aaacattgtaaacaccttgggtaatgag-atttcacca-ttggaaggatcaaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagtgg 26928532  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  26928533 ggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctattttttcttgtaaccctttgtaacactttcatcatagtggattgga 26928632  T
Q  203 gagctgctct 212  Q
    ||| ||||||    
T  26928633 gagttgctct 26928642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 1306202 - 1305996
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | ||||  | |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  1306202 aaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcttaagcttcctcttgtgtcttctcttttagggttcatattgagagagt 1306105  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| || ||| | |||||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||| || |||||||    
T  1306104 ggggaaacacaaatgggtagaaactatgacttgttcttgtgtaagcttgcaaactatt-tttcttgtaaccctttgtaacactttcatcgtagtggattg 1306006  T
Q  201 gagagctgct 210  Q
    ||||||||||    
T  1306005 gagagctgct 1305996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 27453210 - 27453004
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  27453210 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttttagggttcatattgagagagtgg 27453113  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    ||||||||| ||||||| ||  ||||  ||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  27453112 ggaaacacaaatgggtagaaaataggaattgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattgga 27453014  T
Q  203 gagctgctct 212  Q
    ||||||||||    
T  27453013 gagctgctct 27453004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 27974788 - 27974993
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||| ||||||||| |||| |||| ||    
T  27974788 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttt-agggttcattattgagagaatg 27974884  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||||||| ||  |||| |||||||||||||||||||| |  ||||| ||||||||||  ||||||||||||||||||||| ||||||||    
T  27974885 gg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaactctttgtaacactttcatcatagtggattgg 27974982  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  27974983 agagctgctct 27974993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 33386511 - 33386707
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttca-tattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | |||||||||||||||||||||| ||||| ||||||     
T  33386511 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttttagggttcattattgagagagt- 33386607  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    |||||||||| ||||||| ||  |||| |||||||||||||||||||| | |||||| ||||          ||||||||||||||||||| ||||||||    
T  33386608 gggaaacacaaatgggtagaaattaggacttgttcttgtgtaagcttgcaaactatt-tttc----------ttgtaacactttcatcatagtggattgg 33386696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 16264599 - 16264396
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||  ||||||||| |||| |||||||    
T  16264599 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctctt--agggttcatcattgagagagtg 16264504  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || || |||| ||| ||| ||  |||| |||||||||||| ||||||| |  |||||  |||||||||  ||||||||||||||||||||| ||||||||    
T  16264503 ggtaa-cacaaatgtgtagaaattaggtcttgttcttgtggaagcttgcaagctatt--ttcttgtaactctttgtaacactttcatcatagtggattgg 16264407  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  16264406 agagctgctct 16264396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 6794551 - 6794754
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | ||||  | |||||| || | |||||||||| | || | |||||||  ||||||||||||||||||||||    
T  6794551 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaatgaacaaaagcttccttttgtattttctctt--agggttcatattgtgagagtgg 6794646  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    |  | |||| ||||||| ||  |||| |||||||||||||||||||| |  ||| | ||||||||||  ||||||||||||||||||||| |||||||||    
T  6794647 gtga-cacaaatgggtagaaattaggacttgttcttgtgtaagcttgcaagctaat-tttcttgtaactctttgtaacactttcatcatagtggattgga 6794744  T
Q  203 gagctgctct 212  Q
    ||||||||||    
T  6794745 gagctgctct 6794754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 27986292 - 27986487
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | |||||||||||||||||||| |||||| ||||||||    
T  27986292 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttttagggttgatattgagagagtgg 27986389  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    | ||||||| ||||||| ||  |||| |||||||||||||||||||| |  || || ||||||||          ||||||||||||||| |||||||||    
T  27986390 g-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctttt-tttcttgt----------aacactttcatcatagtggattgga 27986477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 22173100 - 22173234
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||  ||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  22173100 ttttagggttcatattaggagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 22173198  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  22173199 gtaacactttc-tcatattggattggagagctgctct 22173234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 35925728 - 35925529
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | |||| |||||||  ||| |||||||||||||||| |    
T  35925728 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgttttctctt--aggattcatattgtgagagt-g 35925634  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    ||  ||||| ||||||| ||  ||||  ||||||| ||||||||||  | ||||   ||||||||||  ||||||||||||||||||||| |||||||||    
T  35925633 ggtgacacaaatgggtagaaattaggttttgttctagtgtaagcttataaacta--atttcttgtaactctttgtaacactttcatcatagtggattgga 35925536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 8370325 - 8370527
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| || ||||||||||||| | ||||  | ||||||||||| |||| ||||| | |||| |||||||  ||| ||||||||||||||||||    
T  8370325 aaacattgtaaacatcttgggtagtgag-atttcacca-ttggaaggatcaaaagtttccttttgtgttttctctt--aggattcatattgtgagagtgg 8370420  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    |  | |||| ||||||| ||  || | |||||||||||||||||||  |  ||| |  |||||||||  ||||||||||||||||||||| |||||||||    
T  8370421 gtga-cacaaatgggtagaaattatgtcttgttcttgtgtaagcttttaagctaat--ttcttgtaactctttgtaacactttcatcatagtggattgga 8370517  T
Q  203 gagctgctct 212  Q
    ||||||||||    
T  8370518 gagctgctct 8370527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 36029343 - 36029141
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | |||| |||||||  ||| |||||||| ||||||||     
T  36029343 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgttttctctt--aggattcatattttgagagtga 36029248  T
Q  103 g-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattg 200  Q
    | || ||| | ||||||| ||  |||| |||||||||||||||| ||| |  ||| |  ||||||||| || |||||||||||||||||||| |||||||    
T  36029247 gtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagtttgtaagctaat--ttcttgtaactcttttgtaacactttcatcatagtggattg 36029151  T
Q  201 gagagctgct 210  Q
    ||||||||||    
T  36029150 gagagctgct 36029141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 21711472 - 21711269
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtg- 101  Q
    ||||||||||| ||||||| |||||||| | ||||  | ||||||||||| |||||||||| | |||| |||||||  ||| |||||  | ||||||||     
T  21711472 aaacattgtaaacaccttgagtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgttttctctt--aggattcattat-tgagagtgt 21711378  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    ||| |||||| ||||||| ||  |||| |||| ||||||||||||||  |  ||| |  |||||||||  ||||||||||||||||||||| |||||| |    
T  21711377 gggtaacacaaatgggtagaaattaggtcttgctcttgtgtaagcttttaagctaat--ttcttgtaactctttgtaacactttcatcatagtggatttg 21711280  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  21711279 agagctgctct 21711269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 40592618 - 40592823
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| ||| ||||||| | |||| |||||||  ||| |||||||||||||||||    
T  40592618 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaaagcttccttttgtgttttctctt--aggattcatattgtgagagtg 40592713  T
Q  102 gg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggatt 199  Q
    || || ||| | ||||||| ||  |||   ||||||||||||||||||| |  ||| |  ||||||||| || |||||||||||||||||||| | ||||    
T  40592714 ggtgacacaaa-atgggtagaaattagattttgttcttgtgtaagcttgtaagctaat--ttcttgtaactcttttgtaacactttcatcatagtcgatt 40592810  T
Q  200 ggagagctgctct 212  Q
    |||||||| ||||    
T  40592811 ggagagcttctct 40592823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 3715838 - 3716043
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| ||| |||| || | |||| |||||||  ||| |||||||||||| ||||    
T  3715838 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaaagctttcttttgtgttttctctt--aggattcatattgtgaaagtg 3715933  T
Q  102 gg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggatt 199  Q
    || || ||| | ||||||| ||  || | |||||||||||||||| ||| |  ||| |  ||||||||| || |||||||||||||||||||| | ||||    
T  3715934 ggtgacacaaa-atgggtagaaattaagtcttgttcttgtgtaagtttgtaagctaat--ttcttgtaactcttttgtaacactttcatcatagtagatt 3716030  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  3716031 ggagagctgctct 3716043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 18656530 - 18656481
Alignment:
Q  162 tcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||||    
T  18656530 tcttgtaaccttttgtaacactttc-tcatattggattggagagctgctct 18656481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 1736293 - 1736346
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  1736293 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 1736346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 18552871 - 18552924
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  18552871 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 18552924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 48438313 - 48438260
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  48438313 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 48438260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 4386915 - 4386968
Alignment:
Q  160 tttcttgtaatcc-tttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||| |||||| ||| ||||||||||||||||||||||    
T  4386915 tttcttgtaacccatttgtatcacttttatcttattggattggagagctgctct 4386968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 26299087 - 26299034
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| | |||||||| ||||||||    
T  26299087 tttcttgtaactcttttgtaacactttcatcatagtagattggagggctgctct 26299034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 40844750 - 40844697
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||| ||| ||||||||    
T  40844750 tttcttgtaactcttttgtaacactttcatcatagtggatttgagggctgctct 40844697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 2672919 - 2672970
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  2672919 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 2672970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 2677075 - 2677126
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  2677075 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 2677126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 8512314 - 8512263
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  8512314 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 8512263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 8517194 - 8517143
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  8517194 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 8517143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 24742197 - 24741986
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24742197 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 24742098  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||  | ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  24742097 ggggaaacaccaaagggtagaatctagggtttgttcttgtgtaagcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattg 24741998  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  24741997 gagagctgctct 24741986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 29760897 - 29760687
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  29760897 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctc--ttagggttcatagtgtgagagt 29760800  T
Q  101 ggggaaacacatatgggtataatctagggcttg-ttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggatt 199  Q
    ||||||||||  | ||||| |||||||| |||| |||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||    
T  29760799 ggggaaacaccaaagggtagaatctaggtcttgtttcttgtgtaagcttgcaggctattgtttcttgtaaccctttgtaacactttcatcatattggatt 29760700  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  29760699 ggagagctgctct 29760687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 28468381 - 28468580
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||| ||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  28468381 aaaaatattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagt 28468478  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| |||||||| |||||| ||||||||||||| | |||||| ||||          ||||||||||||||||||| |||||||    
T  28468479 ggggaaacacaaatgggtagaatctaggtcttgttattgtgtaagcttgcaaactattttttc----------ttgtaacactttcatcatagtggattg 28468568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 31985480 - 31985685
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||  | ||||  | | ||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||    
T  31985480 aaacattgtaaacaccttgggtagtgaa-atttcacca-tgggaaggatcaaaagcttccttttgtgtcttctcttttagggttcacattgtgagagtgg 31985577  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    | ||||||| ||||||| ||  |||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  31985578 g-aaacacaaatgggtagaaattaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattgga 31985675  T
Q  203 gagctgctct 212  Q
    ||||||||||    
T  31985676 gagctgctct 31985685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 5396518 - 5396722
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||| ||| ||||||| || | ||||||||||||| ||||||||| |||| |||||||    
T  5396518 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaagaatcaaaagctttcttttgtgtcttctcttt-agggttcatcattgagagagtg 5396614  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
     | || |||| ||||||| ||  |||| |||||||||||||||||||| |  |||||  |||||||||  ||||| ||||||||||||||| ||||||||    
T  5396615 agtaa-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctatt--ttcttgtaactctttgcaacactttcatcatagtggattgg 5396711  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  5396712 agagctgctct 5396722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 51520637 - 51520503
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||  ||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  51520637 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 51520539  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  51520538 gtaacactttc-tcatattggattggagagctgctct 51520503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 9224312 - 9224446
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||||||||||  | ||||| | ||||||| |||||| ||||| |||||||||| |||  | ||||| ||| | |||    
T  9224312 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaacctttt 9224410  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9224411 gtaacactttc-tcatattggattggagagctgctct 9224446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 9229099 - 9229233
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||||||||||  | ||||| | ||||||| |||||| ||||| |||||||||| |||  | ||||| ||| | |||    
T  9229099 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaacctttt 9229197  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9229198 gtaacactttc-tcatattggattggagagctgctct 9229233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 16623140 - 16623344
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | |||| ||||  |||||| ||||||||||||||||||    
T  16623140 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgttttct--tttaggattcatattgtgagagtgg 16623235  T
Q  103 g-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattg 200  Q
    | || ||| | ||||||| ||  |||| ||||||||| |||||||||     ||| |  ||||||||| || |||||||||||||||||||| |||||||    
T  16623236 gtgacacaaa-atgggtagaaattaggtcttgttcttctgtaagcttattagctaat--ttcttgtaactcttttgtaacactttcatcatagtggattg 16623332  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  16623333 gagagctgctct 16623344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 211
Target Start/End: Complemental strand, 5147891 - 5147724
Alignment:
Q  42 ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtataatctagggcttgttcttgt 140  Q
    |||||||||||  ||||||||| | |||| |||||||| |||||||||||||||||| |||| || ||| | ||||||| ||  |||| |||||||||||    
T  5147891 ttggaaggatcataagcttccttttgtgttttctcttt-agggttcatattgtgagaatgggtgacacaaa-atgggtagaaattaggccttgttcttgt 5147794  T
Q  141 gtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctc 211  Q
    ||||||||| |  |||||  ||||||||| |  |||||||||||||||||||| |||| |||||||||||||    
T  5147793 gtaagcttgcaagctatt--ttcttgtaactattttgtaacactttcatcataatggactggagagctgctc 5147724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 45347723 - 45347856
Alignment:
Q  78 tttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatcctttg 176  Q
    ||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  |  |||||||| | ||||    
T  45347723 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-gtcttgtaaccttttg 45347821  T
Q  177 taacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| |||||||||||||||||||||||||    
T  45347822 taacactttc-tcatattggattggagagctgctct 45347856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 45357203 - 45357335
Alignment:
Q  78 tttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatcctttg 176  Q
    ||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| ||||||| |||||||  |||  ||  ||||||| | ||||    
T  45357203 tttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagagt--cttgtaaccttttg 45357300  T
Q  177 taacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| |||||||||||||||||||||||||    
T  45357301 taacactttc-tcatattggattggagagctgctct 45357335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 3777799 - 3777595
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | |||||| |||| ||| ||||||| | || | |||||||  ||| |||||||||||||||||    
T  3777799 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaatgatcaaaaagcttccttttgtattttctctt--aggattcatattgtgagagtg 3777704  T
Q  102 gg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    || || ||| | ||||||| ||  |||  |||||||||||||||| ||| |  |||||  |||||||||  ||||||||||||||||||||| |||||||    
T  3777703 ggtgacacaaa-atgggtagaaattagatcttgttcttgtgtaagtttgcaagctatt--ttcttgtaactctttgtaacactttcatcatagtggattg 3777607  T
Q  201 gagagctgctct 212  Q
    ||||||| ||||    
T  3777606 gagagctactct 3777595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 3814202 - 3814070
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||| | ||||||| |||||| ||||||| |||||||  |||  ||  ||||||| | |||    
T  3814202 ttttagggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctagagt--cttgtaacctttt 3814106  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3814105 gtaacactttca-catattggattggagagctgctct 3814070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 5143473 - 5143305
Alignment:
Q  42 ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtggg-gaaacacatatgggtataatctagggcttgttcttgt 140  Q
    |||||||||||  ||||||||| | |||| |||||||| |||||||||||| |||||||||  || ||| | ||| ||| ||  |||| |||||||||||    
T  5143473 ttggaaggatcataagcttccttttgtgttttctcttt-agggttcatattctgagagtggctgacacaaa-atgagtagaaattaggtcttgttcttgt 5143376  T
Q  141 gtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||| ||||| |  |||||  ||||||||| |  |||||||||||||||||||| ||| |||||||||||||||    
T  5143375 gtatgcttgcaagctatt--ttcttgtaaattttttgtaacactttcatcatagtgggttggagagctgctct 5143305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 36315228 - 36315280
Alignment:
Q  160 tttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  36315228 tttcttgtaactctttgtaacactttcatcatagtggattggagagctgctct 36315280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 36329437 - 36329489
Alignment:
Q  160 tttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  36329437 tttcttgtaactctttgtaacactttcatcatagtggattggagagctgctct 36329489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 8689380 - 8689485
Alignment:
Q  42 ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacacatatgggtataatctagggcttgttcttgt 140  Q
    ||||||||||| |||| ||||| | ||||||||||||  ||||||||| |||| ||||||||| ||||||| || |||| ||  |||| |||||||||||    
T  8689380 ttggaaggatcaaaagtttccttttgtgtcttctctt--agggttcatcattgagagagtggg-aaacacaaattggtagaaattaggtcttgttcttgt 8689476  T
Q  141 gtaagcttg 149  Q
    |||||||||    
T  8689477 gtaagcttg 8689485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 16628719 - 16628815
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | |||| ||||  |||||| ||||||||||||||||||    
T  16628719 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgttttct--tttaggattcatattgtgagagtgg 16628814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 56146664 - 56146750
Alignment:
Q  125 tagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||| |||||| ||||||| |||||||| |||  ||| ||||||| | |||||||||||||| |||||||||||||||||||||||||    
T  56146664 tagggtttgttcatgtgtaaagcttgaaggctagagtt-cttgtaaccttttgtaacactttc-tcatattggattggagagctgctct 56146750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 5732760 - 5732711
Alignment:
Q  162 tcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||||    
T  5732760 tcttgtaaccttttgtaacactttc-tcatattggattggagagctgctct 5732711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 10047478 - 10047425
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  10047478 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 10047425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 16630678 - 16630727
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctg 208  Q
    |||||||||| || |||||||||||||||||||| |||||||||||||||    
T  16630678 tttcttgtaactcttttgtaacactttcatcatagtggattggagagctg 16630727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 39246093 - 39246040
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  39246093 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 39246040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 6743427 - 6743466
Alignment:
Q  173 tttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  6743427 tttgtaacactttcatcatagtggattggagggctgctct 6743466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 24333894 - 24333855
Alignment:
Q  173 tttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  24333894 tttgtaacacgttcatcatagtggattggagagctgctct 24333855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 38152451 - 38152490
Alignment:
Q  173 tttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  38152451 tttgtaacactttcaccatagtggattggagagctgctct 38152490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 5269204 - 5269242
Alignment:
Q  174 ttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  5269204 ttgtaacactttcatcatagtggattggagggctgctct 5269242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 3796517 - 3796570
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||| ||||| ||||||    
T  3796517 tttcttgtaactcttttgtaacactttcatcatagtggattagagagttgctct 3796570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 5112336 - 5112283
Alignment:
Q  160 tttcttgtaatcc-tttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || ||||||||||||||||  || |||||||||||||||||||    
T  5112336 tttcttgtaacccatttgtaacactttcatattagtggattggagagctgctct 5112283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 20357387 - 20357598
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20357387 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 20357486  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggatt 199  Q
    ||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  20357487 ggggaaacacatatgggtagaatctagggcatgttcttgtgtaaagcttgaaggctattgtttcttgtaaccctttgtaacactttc-tcatattggatt 20357585  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  20357586 ggagagctgctct 20357598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2058225 - 2058011
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttgga--aggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgaga 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2058225 aaaaacattgtaatcaccttgggtagtgaggagttcattagttgggggaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgaga 2058126  T
Q  99 gtggggaaaca-catatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattgga 197  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  2058125 gtggggaaacaacatatgggtagaatctagggcttgttcttgtgtaagcttgaatgctattgtttcttgtaaccctttgtaacactttcatcatattgga 2058026  T
Q  198 ttggagagctgctct 212  Q
    |||||||||||||||    
T  2058025 ttggagagctgctct 2058011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1533284 - 1533495
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1533284 aaaaacattgtaatcaccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 1533382  T
Q  101 ggggaaacacatatgggtataatctagggcttg-ttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggatt 199  Q
    ||| ||||||  | ||||| |||||||| |||| |||||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||||    
T  1533383 gggaaaacaccaaagggtagaatctaggtcttgtttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggatt 1533482  T
Q  200 ggagagctgctct 212  Q
    |||||| ||||||    
T  1533483 ggagagatgctct 1533495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 21640062 - 21639854
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21640062 aaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 21639965  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||| ||| |||||||    
T  21639964 ggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcattatagtggattg 21639866  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  21639865 gagagctgctct 21639854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 21646260 - 21646052
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21646260 aaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaatcttcctctagtgtcttctcttttagggttcatattgtgagagt 21646163  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||| |  ||||| |||||||||| ||||| |||||||||||||||| |||||||    
T  21646162 ggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttttaacactttcatcatagtggattg 21646064  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  21646063 gagagctgctct 21646052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 18413892 - 18413685
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||| ||||| |||||||||||||||| | ||||  | |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||    
T  18413892 aaaaacaatgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcttaagcttcctcttgtgtcttc-cttttagggttcatattgtgagagt 18413796  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| || ||||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||    
T  18413795 ggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaatctatt-tttcttgtaaccctttgtaacactttcatcatagtggattg 18413697  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  18413696 gagagctgctct 18413685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 18409016 - 18408809
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | ||||  | ||  |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||    
T  18409016 aaaaacattgtaaacaccttgggtagtgag-atttcacca-ttaaaaggatcttaagcttcctcttgtgtcttc-cttttagggttcatattgtgagagt 18408920  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| || ||||| |||||||||||||||||||| |   |||| |||||||||| |||||||||||||||||||||| |||||||    
T  18408919 ggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagttatt-tttcttgtaaccctttgtaacactttcatcatactggattg 18408821  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  18408820 gagagctgctct 18408809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 2479586 - 2479382
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| |  | |||||||||| ||||||||| |||| |||||||    
T  2479586 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttatatcttctcttt-agggttcattattgagagagtg 2479490  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||||||| ||  |||| |||||||||||||||||||| |  |||||  ||||| |||  ||||||||||||||||||||| |||||| |    
T  2479489 gg-aaacacacatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctatt--ttcttataactctttgtaacactttcatcatagtggatttg 2479393  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  2479392 agagctgctct 2479382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 21983536 - 21983330
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | ||||  | |||||||||||  ||||||||| | |||| |||||||| |||||||||||| |||||||||    
T  21983536 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcataagcttccttttgtgttttctcttt-agggttcatattttgagagtgg 21983440  T
Q  103 g-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcc--tttgtaacactttcatcatattggatt 199  Q
    | || ||| | ||||||| || ||||| |||||||||||||||||||| |  ||||  ||||||||||  |  |||||||||||||||||||| ||||||    
T  21983439 gtgacacaaa-atgggtagaaactaggtcttgttcttgtgtaagcttgcaagctat--tttcttgtaactctttttgtaacactttcatcatagtggatt 21983343  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  21983342 ggagagctgctct 21983330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 12406512 - 12406382
Alignment:
Q  76 cttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatcctt 174  Q
    |||||||||||||||||||||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | ||    
T  12406512 cttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaaccttt 12406414  T
Q  175 tgtaacactttcatcatattggattggagagct 207  Q
    |||||||||||| ||||||||||||||||||||    
T  12406413 tgtaacactttc-tcatattggattggagagct 12406382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 44848568 - 44848735
Alignment:
Q  42 ttggaaggatctaaagcttcctctagtgtcttctcttttagggttca-tattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgt 140  Q
    ||||||||||| |||||||||| | |||||||||| ||||| ||||| ||||| |||||| |||||||||| ||||||| ||  |||| ||| |||||||    
T  44848568 ttggaaggatcaaaagcttccttttgtgtcttctc-tttagagttcattattgagagagt-gggaaacacaaatgggtagaaattaggtcttattcttgt 44848665  T
Q  141 gtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| |  |  || ||||||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  44848666 gtaagcttgcaagc--ttttttcttgtaactctttgtaacactttcatcatagtggattggagagctgctct 44848735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 29160055 - 29159849
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| ||| ||||||| | |||| |||||||  ||| |||||||||||||||||    
T  29160055 aaacattgtaaacaccttgggtagtgag-atttcaaca-ttggaaggatcaaaaagcttccttttgtgttttctctt--aggattcatattgtgagagtg 29159960  T
Q  102 gg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggatt 199  Q
    || || ||| | ||||||| ||  |||| |||||||||||||||||||| |  ||| |  ||||||||| || |||||||||||||||||||| ||||||    
T  29159959 ggtgacacaaaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaat--ttcttgtaactcttttgtaacactttcatcatagtggatt 29159862  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  29159861 ggagagctgctct 29159849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 12397091 - 12396961
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||||||||| |||||||||||||  | ||||| ||||||||| |||||| ||||| ||| || ||| |||  | ||||||||| | |||    
T  12397091 ttttagggttcatattgtgatagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagattaaaggctagag-ttcttgtaacctttt 12396993  T
Q  176 gtaacactttcatcatattggattggagagctg 208  Q
    ||||||||||| |||||||||||||||||||||    
T  12396992 gtaacactttc-tcatattggattggagagctg 12396961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 24024232 - 24024365
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||  |||||||||||| ||| ||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  |  ||||||||   |||    
T  24024232 ttttagggttcatcgtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta--gagtcttgtaacatttt 24024329  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24024330 gtaacactttc-tcatattggattggagagctgctct 24024365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 31109489 - 31109622
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| |   | ||||| ||||||||| |||||| |||| || |||||||| |||  ||  ||||||| | |||    
T  31109489 ttttagggttcatagtgtgagagtgggaaaatatcaaagggtagaatctagggtttgttcatgtgcaaagcttgaaggctagagt--cttgtaacctttt 31109586  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  31109587 gtaacactttc-tcatattggattggagagctgctct 31109622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 2580533 - 2580436
Alignment:
Q  113 atgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||| || ||||| |||||||||||||||||||| |  |||||  |||||||||  | |||||||||||||||| || |||||||||||||||||||    
T  2580533 atgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt--ttcttgtaactcattgtaacactttcatcttagtggattggagagctgctct 2580436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 9189973 - 9190059
Alignment:
Q  125 tagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||| |||||||||||||||||||| |  ||||| ||||||||||  | |||||||||||||||| || |||||||||||||||||||    
T  9189973 taggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaactcattgtaacactttcatcttagtggattggagagctgctct 9190059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 47263916 - 47263773
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    |||||||||||  ||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||| ||| ||||||||| |||| |||||||    
T  47263916 aaacattgtaaataccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctattt-agggttcattattgagagagtg 47263820  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttg 149  Q
    || ||||||| |||| || ||  |||| ||||||||||||||||||||    
T  47263819 gg-aaacacaaatggatagaaattaggtcttgttcttgtgtaagcttg 47263773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 21989158 - 21988952
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | || |  | |||||||||||  ||||||||| || ||| |||||||| |||||||||||| | |||||||    
T  21989158 aaacattgtaaacaccttgggtagtgag-attttacca-ttggaaggatcataagcttcctttattgttttctcttt-agggttcatatttttagagtgg 21989062  T
Q  103 g-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcc--tttgtaacactttcatcatattggatt 199  Q
    | || ||| | ||||||| || |||||  || ||||||| |||||||| |  ||||  ||||||||||  |  |||||||||||||||||| | ||||||    
T  21989061 gtgacaca-aaatgggtagaaactaggttttattcttgtataagcttgcaatctat--tttcttgtaactctttttgtaacactttcatcaaagtggatt 21988965  T
Q  200 ggagagctgctct 212  Q
    |||||| ||||||    
T  21988964 ggagagttgctct 21988952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 19992408 - 19992359
Alignment:
Q  162 tcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  19992408 tcttgtaaccttttgtaacactttca-catattggattggagagctgctct 19992359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 56046 - 55993
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  56046 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 55993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 2647694 - 2647747
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  2647694 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 2647747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 46516308 - 46516361
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  46516308 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 46516361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 49091760 - 49091707
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||||| ||||||    
T  49091760 tttcttgtaactcttttgtaacactttcatcatagtggattggagagttgctct 49091707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 4866814 - 4866776
Alignment:
Q  173 tttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  4866814 tttgtaacactttc-tcatattggattggagagctgctct 4866776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 47263757 - 47263722
Alignment:
Q  177 taacactttcatcatattggattggagagctgctct 212  Q
    |||||||||||||||| |||||||||||||||||||    
T  47263757 taacactttcatcatagtggattggagagctgctct 47263722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 33332448 - 33332501
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || ||||||||||||||||| || |||||||||| ||||||||    
T  33332448 tttcttgtaactcttttgtaacactttcatcttagtggattggagggctgctct 33332501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 20284187 - 20284135
Alignment:
Q  160 tttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||  | |||||||||||||||| || |||||||||| ||||||||    
T  20284187 tttcttgtaacgcattgtaacactttcatcttagtggattggagggctgctct 20284135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 24261311 - 24261362
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  24261311 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 24261362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 24266190 - 24266241
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  24266190 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 24266241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5674610 - 5674821
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5674610 aaaaacattgtaatcaccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 5674708  T
Q  101 ggggaaacacatatgggtataatctagggcttg-ttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggatt 199  Q
    ||||||||||  | ||||| |||||||| |||| |||||||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||||    
T  5674709 ggggaaacaccaaagggtagaatctaggtcttgtttcttgtgtaagcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggatt 5674808  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  5674809 ggagagctgctct 5674821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 22709260 - 22709064
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||| ||||||| | ||||  | ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  22709260 aaacattgtaaacaccttggatagtgag-atttcacca-ttggaaggatcaaaaacttcctcttgtgtcttctcttttagggttcatattgtgagagtgg 22709163  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    ||||||||| ||||||| || ||||| |||||||||||||||||||| |  ||||| ||||          ||||||||||||||||||| |||||||||    
T  22709162 ggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttc----------ttgtaacactttcatcatagtggattgga 22709074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 21356287 - 21356082
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||| | ||||||| ||| |||||||||| | ||||||| ||||| ||||||||| |||| |||||||    
T  21356287 aaacattgtaaacaccttgggtagtgag-atttcatca-ttggaagaatcaaaagcttccttttgtgtcttttcttt-agggttcattattgagagagtg 21356191  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
     | ||||||| ||||||| ||  |||| |||||||||||||||||||| |   |||| ||||||||||  ||| ||||||||||||||||| ||||||||    
T  21356190 ag-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagttatt-tttcttgtaactcttagtaacactttcatcatagtggattgg 21356093  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  21356092 agagctgctct 21356082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 11857154 - 11857020
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||||||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  11857154 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 11857056  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11857055 gtaacactttc-tcatattggattggagagctgctct 11857020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 5757325 - 5757529
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| ||||||||||   ||||||||||||| ||||||||| |||| ||||| |    
T  5757325 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttccgtgtcttctcttt-agggttcattattgagagagag 5757421  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
     |||| |||| ||||||| ||  |||| ||||||||||| |||||||| |  |||||  |||||||||  ||||||||||||||||||||| ||||||||    
T  5757422 tggaa-cacaaatgggtagaaattaggtcttgttcttgtataagcttgcaagctatt--ttcttgtaactctttgtaacactttcatcatagtggattgg 5757518  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  5757519 agagctgctct 5757529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 22010602 - 22010736
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||||||||||||||||| |   | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  22010602 ttttagggttcatattgtgagagtggggaaatatcaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 22010700  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  22010701 gtaacactttc-tcatattggattggagagctgctct 22010736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 14737482 - 14737615
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| | ||| |||||||||| |||  |  |||||||| | |||    
T  14737482 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggcta--gagtcttgtaacctttt 14737579  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  14737580 gtaacactttc-tcatattggattggagagctgctct 14737615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 14742342 - 14742475
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| | ||| |||||||||| |||  |  |||||||| | |||    
T  14742342 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatatgtaaagcttgaaggcta--gagtcttgtaacctttt 14742439  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  14742440 gtaacactttc-tcatattggattggagagctgctct 14742475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 28184684 - 28184551
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  |  | |||||| | |||    
T  28184684 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta--gagtgttgtaacctttt 28184587  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  28184586 gtaacactttc-tcatattagattggagagctgctct 28184551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 28155477 - 28155608
Alignment:
Q  78 tttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatcctttg 176  Q
    ||||||||||||| |||||||||||| ||| ||  | ||||| | ||||||| |||||| ||||||| |||||||  |||    ||||||||| | ||||    
T  28155477 tttagggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagctaaa--ttcttgtaaccttttg 28155573  T
Q  177 taacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| |||||||||||||||||||||||||    
T  28155574 taacactttc-tcatattggattggagagctgctct 28155608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 31086471 - 31086524
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  31086471 tttcttgtaactcctttgtaacactttcatcatagtggattggagagttgctct 31086524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 5572090 - 5572292
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | |||| || |||||| |||| |||||||||| | |||| |||||||  ||| |||||  || ||| ||||    
T  5572090 aaacattgtaaacaccttgggtagtgag-atttcacta-ttggaatgatcaaaagcttccttttgtgttttctctt--aggattcat--tgagagtgtgg 5572183  T
Q  103 g-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattg 200  Q
    | || ||| | ||| ||| ||  |||| |||||||||||||||||||  |  ||| |  ||||||||| || |||||||||||||||||||| |||||||    
T  5572184 gtgacacaaa-atgcgtagaaattaggtcttgttcttgtgtaagcttataagctaat--ttcttgtaactcttttgtaacactttcatcatagtggattg 5572280  T
Q  201 gagagctgctct 212  Q
    ||| ||||||||    
T  5572281 gagggctgctct 5572292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 22963798 - 22963745
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  22963798 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 22963745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 23824595 - 23824648
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  23824595 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 23824648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 4630039 - 4630000
Alignment:
Q  173 tttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  4630039 tttgtaacactttcatcttagtggattggagagctgctct 4630000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 10077177 - 10077216
Alignment:
Q  173 tttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  10077177 tttgtaacactttcatcatagtggattggagggctgctct 10077216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 6005514 - 6005463
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  6005514 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 6005463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 16838841 - 16838790
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  16838841 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 16838790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 21801342 - 21801394
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctc 211  Q
    |||||||||| || ||||||||||||| ||| || ||||||||||||||||||    
T  21801342 tttcttgtaactcttttgtaacacttttatcttagtggattggagagctgctc 21801394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 33330433 - 33330484
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  33330433 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 33330484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 33335930 - 33335981
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  33335930 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 33335981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 24787204 - 24787415
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24787204 aaaaacattataatcaccttgggcagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 24787303  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggatt 199  Q
     |||||||||  | ||||| ||||||||  |||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  24787304 tgggaaacaccaaagggtagaatctaggatttgttcttgtgtaatgcttgaaggctattgtttcttgtaaccctttgtaacactttc-tcatattggatt 24787402  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  24787403 ggagagctgctct 24787415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 24202612 - 24202820
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||| |  |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24202612 aaaaacattgtaatcaccttgggtagtgag-atctcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 24202709  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||    
T  24202710 ggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattg 24202808  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  24202809 gagagctgctct 24202820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 19361276 - 19361483
Alignment:
Q  2 aaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    |||||||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19361276 aaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtg 19361373  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  19361374 gggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaaactatt-tttcttgtaaccctttgtaacactttcatcatagtggattgg 19361472  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  19361473 agagctgctct 19361483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 19379916 - 19380123
Alignment:
Q  2 aaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    |||||||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19379916 aaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtg 19380013  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  19380014 gggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaaactatt-tttcttgtaaccctttgtaacactttcatcatagtggattgg 19380112  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  19380113 agagctgctct 19380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 19358687 - 19358894
Alignment:
Q  2 aaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    |||||||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19358687 aaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagtg 19358784  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  19358785 gggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattgg 19358883  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  19358884 agagctgctct 19358894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 19366151 - 19366297
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||| ||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  19366151 aaaaatattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgagagagt 19366248  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttg 149  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  19366249 ggggaaacacaaatgggtagaatctaggtcttgttcttgtgtaagcttg 19366297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 13604469 - 13604674
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||| ||||||||| |||| |||||||    
T  13604469 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttt-agggttcattattgagagagtg 13604565  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||||||| ||  |||| |||||||||||||||| ||| |  ||||| ||||||||||  |||||||||| |||||||||| ||||||||    
T  13604566 gg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagtttgcaagctatt-tttcttgtaactctttgtaacattttcatcatagtggattgg 13604663  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  13604664 agagctgctct 13604674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 3281957 - 3281754
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||  ||||||||| |||| |||||||    
T  3281957 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctctt--agggttcatcattgagagagtg 3281862  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||||||| ||  |||| |||||||||||||||||||| |  |||||  |||||||||  ||||||||||||||||||||  ||||||||    
T  3281861 gg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctatt--ttcttgtaactctttgtaacactttcatcatcgtggattgg 3281765  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  3281764 agagctgctct 3281754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 26644745 - 26644948
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| ||||||| |||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||  ||||||||| |||| |||||||    
T  26644745 aaacattgtaaacaccttgagtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctctt--agggttcatcattgagagagtg 26644840  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
     | ||||||| ||||||| ||  |||| |||||||||||||||||||| |  |||||  |||||||||  ||||||||||||||||||||| ||||||||    
T  26644841 ag-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctatt--ttcttgtaactctttgtaacactttcatcataatggattgg 26644937  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  26644938 agagctgctct 26644948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 21536416 - 21536620
Alignment:
Q  2 aaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagt 100  Q
    |||||||||||| ||||||||||||| || | ||||  | ||||||||||| |||||||||| | ||||||||||||  ||||||||| |||| ||||||    
T  21536416 aaaacattgtaaacaccttgggtagtaag-atttcacca-ttggaaggatcgaaagcttccttttgtgtcttctctt--agggttcatcattgagagagt 21536511  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||| || |||| | ||||| ||  || |  ||||||||||||||||||| |  |||||  |||||||||  ||||||||||||||||| ||| |||||||    
T  21536512 gggtaa-cacaaacgggtagaaattaagtattgttcttgtgtaagcttgcaagctatt--ttcttgtaactctttgtaacactttcattatagtggattg 21536608  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  21536609 gagagctgctct 21536620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 41390760 - 41390627
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  |  |||||||| | |||    
T  41390760 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 41390663  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  41390662 gtaacactttc-tcatattggattggagagctgctct 41390627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 41398415 - 41398282
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  |  |||||||| | |||    
T  41398415 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggcta--gagtcttgtaacctttt 41398318  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  41398317 gtaacactttc-tcatattggattggagagctgctct 41398282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 37069980 - 37069816
Alignment:
Q  42 ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtggggaaacacatatgggtataatctagggcttgttcttgt 140  Q
    ||||||||||| |||||||||| | ||||||||||||| | ||||||| |||| | ||||||| || |||| ||||||| ||  |||| |||||||||||    
T  37069980 ttggaaggatcaaaagcttccttttgtgtcttctcttt-atggttcattattgagtgagtgggtaa-cacaaatgggtagaaattaggtcttgttcttgt 37069883  T
Q  141 gtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| | ||||||     ||||||  ||||||||||||||||||||| ||||| |||||| ||||||    
T  37069882 gtaagcttgcaaactatt-----ttgtaactctttgtaacactttcatcatagtggatcggagagatgctct 37069816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 47703855 - 47703987
Alignment:
Q  79 ttagggttcatattgtgagagtggg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatccttt-g 176  Q
    ||||| ||||||||||||||||||| || ||| | ||||||| ||  |||| |||||||||||||||||||| |  ||| |  |||||||||| |||| |    
T  47703855 ttaggattcatattgtgagagtgggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaat--ttcttgtaattcttttg 47703951  T
Q  177 taacactttcatcatattggattggagagctgctct 212  Q
    |||||||||||||||| |||||||||||||||||||    
T  47703952 taacactttcatcatagtggattggagagctgctct 47703987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 32889571 - 32889485
Alignment:
Q  125 tagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||| |||||||||||||||||||| |  ||||| ||||||||||  | |||||||||||||||| || |||||||||||||||||||    
T  32889571 taggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaactcattgtaacactttcatcttagtggattggagagctgctct 32889485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 27104370 - 27104423
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  27104370 tttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctct 27104423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 25445079 - 25445128
Alignment:
Q  162 tcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||||    
T  25445079 tcttgtaaccttttgtaacactttc-tcatattggattggagagctgctct 25445128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 9476393 - 9476307
Alignment:
Q  125 tagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||| |||||||||||||||||||| |  ||| |  ||||| ||| || ||||||| |||||||||||| |||||||||||||||||||    
T  9476393 taggtcttgttcttgtgtaagcttgtaagctaat--ttcttataactcttttgtaatactttcatcatagtggattggagagctgctct 9476307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 16124514 - 16124567
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  16124514 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 16124567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 19073027 - 19072974
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || ||||||||||||||||| || |||||||||||||||||||    
T  19073027 tttcttgtaactcttttgtaacactttcatcttagtggattggagagctgctct 19072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 19120917 - 19120864
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || ||||||||||||||||| || |||||||||||||||||||    
T  19120917 tttcttgtaactcttttgtaacactttcatcttagtggattggagagctgctct 19120864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 29651910 - 29651857
Alignment:
Q  160 tttcttgtaatccttt-gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||| ||||||||||||||||| |||||||||| ||||||||    
T  29651910 tttcttgtaattcttttgtaacactttcatcatagtggattggagtgctgctct 29651857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 43988452 - 43988503
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  43988452 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 43988503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 47098823 - 47098875
Alignment:
Q  160 tttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||  | |||||||||||||||| || |||||||||| ||||||||    
T  47098823 tttcttgtaactcattgtaacactttcatcttagtggattggagggctgctct 47098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 31180470 - 31180260
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31180470 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttatggttcatattgtgagagt 31180371  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggatt 199  Q
    ||||||||||  | ||||| ||||||||| ||| |||||||| |||||||||| |||  ||||||||||| |||||||||||||||| ||||||||||||    
T  31180370 ggggaaacaccaaagggtagaatctagggtttg-tcttgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttc-tcatattggatt 31180273  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  31180272 ggagagctgctct 31180260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30631663 - 30631452
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtg-aggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagag 99  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  30631663 aaaaacattgtaatcaccttgggtagtggaggagttcattagttggaaggatctaaagcttcctctagtgacttctc-tttagggttcatattgtgagag 30631565  T
Q  100 tggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggat 198  Q
    |||||||||||  | ||||| |||||| || |||||| ||||| |||||||||| |||  ||||||||||| |||||||||||||||| |||||||||||    
T  30631564 tggggaaacaccaaagggtagaatctatggtttgttcatgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttc-tcatattggat 30631466  T
Q  199 tggagagctgctct 212  Q
    ||||||||||||||    
T  30631465 tggagagctgctct 30631452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 24136103 - 24135894
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24136103 aaaaacattgtaatcaccttgggtagtgaggagttcacca-ttggaaggatctaaagcttcctctagtgtcttctcttttagggttcacattgtgagagt 24136005  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||  | ||||| |||||||| |||||||||||||||||||| |  ||||| |||||||||| ||||||||||||||||||| || || ||||    
T  24136004 ggggaaacaccaaagggtagaatctaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcttagtgcattg 24135906  T
Q  201 gagagctgctct 212  Q
    || |||||||||    
T  24135905 gatagctgctct 24135894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 38219652 - 38219444
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    ||||||||||||| |||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38219652 aaaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagt 38219555  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| || ||||| |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||    
T  38219554 ggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattg 38219456  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  38219455 gagagctgctct 38219444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 35387916 - 35387708
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||| | ||||  | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35387916 aaaaacattgtaatcaccttgggtagtgag-atttcacca-ttggaaggatctaaaacttcctctagtgtcttctcttttagggttcatattgtgagagt 35387819  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| || ||||| ||| |||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| | |||||    
T  35387818 ggggaaacacaaatgggtagaaactaggacttattcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtagattg 35387720  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  35387719 gagagctgctct 35387708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 38192369 - 38192219
Alignment:
Q  61 cctctagtgtcttctcttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgt 160  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||| |  ||||| |    
T  38192369 cctcttgtgtcttctcttttagggttcatattgtgagagtggggaaacacaaatgggtagaaactaggacttgttcttgtgtaagcttgcaagctatt-t 38192271  T
Q  161 ttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  38192270 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctct 38192219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 15464784 - 15464578
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    |||||| |||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  15464784 aaacatcgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttttagggttcattattgtgagagtg 15464687  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||||||| ||  |||| |||||||||||||||||||| |  ||||| ||||||||||  ||||||||||||||||||||| ||||||||    
T  15464686 gg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaactctttgtaacactttcatcatagtggattgg 15464589  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  15464588 agagctgctct 15464578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 36932195 - 36932401
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||||| ||||||||| ||||||||||||| |||| |||||||    
T  36932195 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttcctcttgtgtcttctgttttagggttcattattgagagagtg 36932292  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||||||| ||  || | ||||||||| ||||| |||| |  ||||| ||||||||||  ||||||||||||||||||||| ||||||||    
T  36932293 gg-aaacacaaatgggtagaaattaagtcttgttcttatgtaaacttgcaagctatt-tttcttgtaactctttgtaacactttcatcatagtggattgg 36932390  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  36932391 agagctgctct 36932401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 9353179 - 9353383
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttca-tattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | |||||||||| |||| |||||| ||||| ||||||     
T  9353179 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctc-tttaaggttcattattgagagagt- 9353274  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    |||||||||| ||||||| ||  |||  |||||||||||||||||||| |  |  || ||||||||||  ||||||||||||||||||||| ||||||||    
T  9353275 gggaaacacaaatgggtagaaattagatcttgttcttgtgtaagcttgcaagc--ttttttcttgtaactctttgtaacactttcatcatagtggattgg 9353372  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  9353373 agagctgctct 9353383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 14520480 - 14520276
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcata-ttgtgagagtg 101  Q
    ||||||||||| |||||||| ||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||| |||||||||| ||| |||||||    
T  14520480 aaacattgtaaacaccttggatagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttt-agggttcataattgagagagtg 14520384  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || || |||| ||||||| ||  |||| |||||||||||||||||||| |  |||||  |||||||||  ||||||||||||||||||||| |||||||     
T  14520383 ggtaa-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctatt--ttcttgtaactctttgtaacactttcatcatagtggattga 14520287  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  14520286 agagctgctct 14520276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 1457067 - 1457201
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||||||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  1457067 ttttagggttcatattgtgagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 1457165  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1457166 gtaacactttc-tcatattggattggagagctgctct 1457201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 27445150 - 27445016
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||  ||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  27445150 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 27445052  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  27445051 gtaacactttc-tcatattggattggagagctgctct 27445016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 27449994 - 27449860
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||  ||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  27449994 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 27449896  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  27449895 gtaacactttc-tcatattggattggagagctgctct 27449860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 43592459 - 43592325
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||  ||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  43592459 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43592361  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  43592360 gtaacactttc-tcatattggattggagagctgctct 43592325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 43598904 - 43598770
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||  ||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  43598904 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43598806  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  43598805 gtaacactttc-tcatattggattggagagctgctct 43598770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 43604396 - 43604262
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||  ||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  43604396 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43604298  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  43604297 gtaacactttc-tcatattggattggagagctgctct 43604262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 43609888 - 43609754
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    ||||||||||||||||  ||||||||||||||||  | ||||| ||||||||| |||||| ||||| |||||||||| |||  | ||||||||| | |||    
T  43609888 ttttagggttcatattaagagagtggggaaacaccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttgtaacctttt 43609790  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  43609789 gtaacactttc-tcatattggattggagagctgctct 43609754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 11916819 - 11917023
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| ||| |||||| | |||| |||||||  |||||||||  | |||||||||    
T  11916819 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaaacttccttttgtgttttctctt--agggttcatcgtttgagagtgg 11916914  T
Q  103 g-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattg 200  Q
    | || ||| | ||||||| ||  |||| |||||||||||||||||||| | ||||||  ||||||||| || |||||||||||||||| ||| |||||||    
T  11916915 gtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgcaaactatt--ttcttgtaactcttttgtaacactttcattatagtggattg 11917011  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  11917012 gagagctgctct 11917023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 3880476 - 3880345
Alignment:
Q  80 tagggttcatattgtgagagtggg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgt 177  Q
    |||| ||||||||||||||||||| || ||| | ||||||| ||  |||| |||||||||||||||||||| | |||| |  ||||||||| || |||||    
T  3880476 taggattcatattgtgagagtgggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgtaaactaat--ttcttgtaactcttttgt 3880380  T
Q  178 aacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||||||| |||||||||||||||||||    
T  3880379 aacactttcatcatagtggattggagagctgctct 3880345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 12084024 - 12084226
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||| ||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | |||| || ||||  ||| ||||||||||||||||||    
T  12084024 aaacattttaaacaccttgggtagtgagaa-ttcaccatttggaaggata-aaagcttccttttgtgttttttctt--aggattcatattgtgagagtgg 12084119  T
Q  103 ggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgga 202  Q
    |  | |||| ||||||| ||  |||| |||||||||||||||||||  |   || |  |||||||||  ||||||||||||||||||||| |||||||||    
T  12084120 gtga-cacaaatgggtagaaattaggtcttgttcttgtgtaagcttttaagttaat--ttcttgtaactctttgtaacactttcatcatagtggattgga 12084216  T
Q  203 gagctgctct 212  Q
    ||||||||||    
T  12084217 gagctgctct 12084226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 10282002 - 10281797
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaa-gcttcctctagtgtcttctcttttagggttcatattgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| ||| |||| || | |||| |||||||  ||| ||||||||||||| |||    
T  10282002 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaaagctttcttttgtgttttctctt--aggattcatattgtgagtgtg 10281907  T
Q  102 gg-gaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggatt 199  Q
    || || ||| | ||||||| ||  |||| |||||||||||||||||||| |  ||| |  ||||||||| || |||||||||||||||||||| ||||||    
T  10281906 ggtgacacaaa-atgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaat--ttcttgtaactcttttgtaacactttcatcatagtggatt 10281810  T
Q  200 ggagagctgctct 212  Q
    |||||||||||||    
T  10281809 ggagagctgctct 10281797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 15044865 - 15044732
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||| ||||||||| |||||| ||||||| |||||||  |||  ||  ||||||| | |||    
T  15044865 ttttagggttcatagtgtgagagtgggaaaataccaaagggtagaatctagggtttgttcatgtgtaaagcttgaaagctagagt--cttgtaacctttt 15044768  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  15044767 gtaacactttc-tcatattggattggagagctgctct 15044732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 19588845 - 19588792
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  19588845 tttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctct 19588792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 37556613 - 37556661
Alignment:
Q  163 cttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  37556613 cttgtaaccttttgtaacactttca-catattggattggagagctgctct 37556661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 37561435 - 37561483
Alignment:
Q  163 cttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  37561435 cttgtaaccttttgtaacactttca-catattggattggagagctgctct 37561483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 28807485 - 28807611
Alignment:
Q  82 gggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatcctttgtaac 180  Q
    ||||||||| |||||||||||| ||| ||  | ||||| | ||||||| |||||| ||||||| |||||||  |||  | ||||||||| | ||||||||    
T  28807485 gggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaac 28807581  T
Q  181 actttcatcatattggattggagagctgctct 212  Q
    |||| || ||||||||||||||||||||||||    
T  28807582 actt-ca-catattggattggagagctgctct 28807611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 31300561 - 31300640
Alignment:
Q  125 tagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattggagag 205  Q
    |||| |||||||||||||||||||| | |||||| ||||||| ||  | || ||||||||||||| || ||||||||||||    
T  31300561 taggacttgttcttgtgtaagcttgcaaactatt-tttcttgcaactcattataacactttcatcttagtggattggagag 31300640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 2785472 - 2785421
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  2785472 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 2785421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 28832357 - 28832305
Alignment:
Q  160 tttcttgtaatcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||  | |||||||||||||||| || |||||||||| ||||||||    
T  28832357 tttcttgtaactcattgtaacactttcatcttagtggattggagggctgctct 28832305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 31396981 - 31397032
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  31396981 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 31397032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 31401838 - 31401889
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  31401838 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 31401889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 33768276 - 33768225
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  33768276 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 33768225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 33791413 - 33791362
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  33791413 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 33791362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 17795 - 18003
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17795 aaaaacattgtaatcaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagt 17892  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| || ||| | |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||    
T  17893 ggggaaacacaaatgggtagaaactatgacttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattg 17991  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  17992 gagagctgctct 18003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 23888 - 24096
Alignment:
Q  1 aaaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagt 100  Q
    |||||||||||||||||||||||||||||| | ||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23888 aaaaacattgtaatcaccttgggtagtgag-atttcacca-ttggaaggatctaaagcttcctcttgtgtcttctcttttagggttcatattgtgagagt 23985  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||||||||||| ||||||| || ||| | |||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||||| |||||||    
T  23986 ggggaaacacaaatgggtagaaactatgacttgttcttgtgtaagcttgcaagctatt-tttcttgtaaccctttgtaacactttcatcatagtggattg 24084  T
Q  201 gagagctgctct 212  Q
    ||||||||||||    
T  24085 gagagctgctct 24096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 8264 - 8470
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||  |||||||||| | ||||||||||||||||||||||| |||| |||||||    
T  8264 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggattaaaagcttccttttgtgtcttctcttttagggttcattattgagagagtg 8361  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||  ||| ||  |||| |||||||||||||||||||| |  ||||| ||||||||||  ||||||||||||||||||||| ||||||||    
T  8362 gg-aaacacaaatacgtagaaattaggtcttgttcttgtgtaagcttgcaagctatt-tttcttgtaactctttgtaacactttcatcatagtggattgg 8459  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  8460 agagctgctct 8470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 133126 - 133331
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||| ||||||||| |||| |||||||    
T  133126 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttt-agggttcattattgagagagtg 133222  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    || ||||||| ||||||| ||  |||| |||||||||||||||| ||| |  ||||| ||||||||||  |||||||||| |||||||||| ||||||||    
T  133223 gg-aaacacaaatgggtagaaattaggtcttgttcttgtgtaagtttgcaagctatt-tttcttgtaactctttgtaacattttcatcatagtggattgg 133320  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  133321 agagctgctct 133331  T

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Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 2577 - 2540
Alignment:
Q  173 tttgtaacactttcatcatattggattggagagctgct 210  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  2577 tttgtaacactttcatcatagtggattggagggctgct 2540  T

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Target: scaffold0087 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 43808 - 44012
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagtg 101  Q
    ||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||| ||||||||| |||| ||||| |    
T  43808 aaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttt-agggttcattattgagagagag 43904  T
Q  102 gggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
     |||| |||| ||||||| ||  |||| ||||||||||| |||||||| |  |||||  |||||||||  ||||||||||||||||||||| ||||||||    
T  43905 tggaa-cacaaatgggtagaaattaggtcttgttcttgtataagcttgcaagctatt--ttcttgtaactctttgtaacactttcatcatagtggattgg 44001  T
Q  202 agagctgctct 212  Q
    |||||||||||    
T  44002 agagctgctct 44012  T

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Target: scaffold0087; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 36678 - 36883
Alignment:
Q  2 aaaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcat-attgtgagagt 100  Q
    |||||||||||| |||||||||||||||| | ||||  | ||||||||||| |||||||||| | ||||||||||||| ||||||||| |||| ||||||    
T  36678 aaaacattgtaaacaccttgggtagtgag-atttcacca-ttggaaggatcaaaagcttccttttgtgtcttctcttt-agggttcattattgagagagt 36774  T
Q  101 ggggaaacacatatgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattg 200  Q
    ||| ||||||| ||||||| ||   | | |||||||||||||||||||| |  |||||  |||||||||  ||||||||||||||||||||| ||| |||    
T  36775 ggg-aaacacaaatgggtagaaatcatgtcttgttcttgtgtaagcttgcaagctatt--ttcttgtaactctttgtaacactttcatcatagtgggttg 36871  T
Q  201 gagagctgctct 212  Q
    | ||||||||||    
T  36872 gcgagctgctct 36883  T

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Target: scaffold0135 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 34967 - 35101
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgt-aagcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||||||||||  | ||||| | ||||||| |||||| ||||| |||||||||| |||  | ||||| ||| | |||    
T  34967 ttttagggttcatagtgtgagagtggggaaacaccaaagggtagagtctagggtttgttcatgtgtaaagcttgaaggctagag-ttcttctaacctttt 35065  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35066 gtaacactttc-tcatattggattggagagctgctct 35101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 9549 - 9681
Alignment:
Q  77 ttttagggttcatattgtgagagtggggaaacacatatgggtataatctagggcttgttcttgtgtaa-gcttgaagactattgtttcttgtaatccttt 175  Q
    |||||||||||||| |||||||||||| ||| ||  | ||||| | ||||||| |||||| ||||||| |||||||| |||  ||  ||||||| | |||    
T  9549 ttttagggttcatagtgtgagagtgggaaaataccaaagggtaga-tctagggtttgttcatgtgtaaagcttgaaggctagagt--cttgtaacctttt 9645  T
Q  176 gtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9646 gtaacactttc-tcatattggattggagagctgctct 9681  T

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Target: scaffold0148 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 10861 - 10775
Alignment:
Q  125 tagggcttgttcttgtgtaagcttgaagactattgtttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||| |||||||||||||||||||| | |||| |  ||||||||| || ||||||||||||||||| || |||||||||||||||||||    
T  10861 taggtcttgttcttgtgtaagcttgtaaactaat--ttcttgtaactcttttgtaacactttcatcttagtggattggagagctgctct 10775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 85933 - 85729
Alignment:
Q  3 aaacattgtaatcaccttgggtagtgaggagttcattagttggaaggatctaaagcttcctctagtgtcttctcttttagggttcatattgtgagagtgg 102  Q
    ||||||||||| ||| |||||||||||| | ||||  | ||||||||||| ||| |||||| | |||| || ||| ||||  ||||||||||| ||||||    
T  85933 aaacattgtaaacactttgggtagtgag-atttcacca-ttggaaggatcaaaaacttccttttgtgtttt-tctcttagaattcatattgtgggagtgg 85837  T
Q  103 ggaaacacata-tgggtataatctagggcttgttcttgtgtaagcttgaagactattgtttcttgtaatcctttgtaacactttcatcatattggattgg 201  Q
    | | ||||| | |||||| ||  |||| |||| ||||||||||||||  |  ||| |  |||||||||  ||||||||||||||||||||  ||||||||    
T  85836 g-agacacaaaatgggtagaaattaggtcttgctcttgtgtaagcttttaagctaat--ttcttgtaactctttgtaacactttcatcatggtggattgg 85740  T
Q  202 agagctgctct 212  Q
    ||||| |||||    
T  85739 agagccgctct 85729  T

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Target: scaffold0098 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 45337 - 45299
Alignment:
Q  174 ttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  45337 ttgtaacgctttcatcatagtggattggagagctgctct 45299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 17362 - 17309
Alignment:
Q  160 tttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    |||||||||| || |||||||||||||||||||| |||||||||| | ||||||    
T  17362 tttcttgtaactcttttgtaacactttcatcataatggattggagggttgctct 17309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 14297 - 14348
Alignment:
Q  161 ttcttgtaa-tcctttgtaacactttcatcatattggattggagagctgctct 212  Q
    ||||||||| || |||||||||| |||| ||||||||||||||||||||||||    
T  14297 ttcttgtaactcttttgtaacacattca-catattggattggagagctgctct 14348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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