View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16704_high_3 (Length: 463)
Name: NF16704_high_3
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 449
Target Start/End: Original strand, 29313798 - 29314235
Alignment:
| Q |
11 |
caaaggaaacctaaatacctaacaatgtaatactctttttctaagaaacagttcaaacataccaatgaagttagaaaccttaaatacaaagacacctccc |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29313798 |
caaaggaaacctaaatacctaacaatgtaatactctttttctaagaaacagttcaaacataccaatgaagttagaaaccttgaatacaaagacacctccc |
29313897 |
T |
|
| Q |
111 |
ctatctaccaacccaaacatgatcgtatgaatcatacaaatgaattaaactatggacattgaaacagaatttaatcattacaattggaaacattgcatta |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29313898 |
ctatctaccaacccaaacatgatcgcatgaatcatacaaatgaattaaactatggacattgaaacagaatttaatcattacaattggaaacattgcatta |
29313997 |
T |
|
| Q |
211 |
gaattaaaatgttgctacactatgaaattcgacaaaaacccataaaattaaaaggggcaaatacacccatatgaagtggaacttgaaccgtatcatataa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29313998 |
gaattaaaatgttgctacactatgaaattcgacaaaaacccataaaattaaaaggggcaaatac-cccatatgaagtggaacttgaaccgtatcatataa |
29314096 |
T |
|
| Q |
311 |
cattaataacacattatgattnnnnnnngcccttttttaagcttattttccctaccagagctaaacaatgaaaggggcaagaattgaatagacaacccac |
410 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
29314097 |
cattaataacacattatgattaaaaaaagcccttttttaagcttattttccctaccagagctaaacaataaaaggggcaagaattgaagagacaacccac |
29314196 |
T |
|
| Q |
411 |
cagctgaatcgttgaaagatctcaactttatgatcagaa |
449 |
Q |
| |
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| T |
29314197 |
cagctgaatcgttgaaagatctcaactttatgatcagaa |
29314235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 449
Target Start/End: Complemental strand, 29317435 - 29316997
Alignment:
| Q |
11 |
caaaggaaacctaaatacctaacaatgtaatactctttttctaagaaacagttcaaacataccaatgaagttagaaaccttaaatacaaagacacctccc |
110 |
Q |
| |
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||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29317435 |
caaagaaaacctaaataactaacaatgtaatgctttttttctaagaaacagttcaaacataccaatgaagttagaaaccttaaatacaaagacacctccc |
29317336 |
T |
|
| Q |
111 |
ctatctaccaacccaaacatgatcgtatgaatcatacaaatgaattaaactatggacattgaaacagaatttaatcattacaattggaaacattgcatta |
210 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29317335 |
ctatctaccaacccaaacatgatctcatgaatcatacaaatgaattaaactatggacattgaaacagaatttaatcattacaattggaaacattgcatta |
29317236 |
T |
|
| Q |
211 |
gaattaaaatgttgctacactatgaaattcgacaaaaacccataaaattaaaaggggcaaatacacccatatgaagtggaacttgaaccgtatcatataa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29317235 |
gaattaaaatgttgctacactatgaaattcgacaaaaacccataaaattaaaaggggcgaatacacccatatgaagtggaacttgaaccgtatcatataa |
29317136 |
T |
|
| Q |
311 |
cattaataacacattatgattnnnnnnngcccttttttaagcttattttccctaccagagctaaacaatgaaaggggcaagaattgaatagacaacccac |
410 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29317135 |
cattaataacacattatgattaaaaaaagcccttttttaagcttattttccctaccagagctaaacaatgaaaggggcaagaattgaagagacaacccac |
29317036 |
T |
|
| Q |
411 |
cagctgaatcgttgaaagatctcaactttatgatcagaa |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29317035 |
cagctgaatcgttgaaagatctcaactttatgatcagaa |
29316997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 29313630 - 29313731
Alignment:
| Q |
11 |
caaaggaaacctaaatacctaacaatgtaatactctttttctaagaaacagttcaaacataccaatgaagttagaaaccttaaatacaaagacacctccc |
110 |
Q |
| |
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||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29313630 |
caaagaaaacctaaatacctaacaatgtaatgct-tttttctaagaaacagtacaaacataccaatgaagttagaaaccttaaatacaaagacacctccc |
29313728 |
T |
|
| Q |
111 |
cta |
113 |
Q |
| |
|
||| |
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|
| T |
29313729 |
cta |
29313731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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