View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16704_high_4 (Length: 362)
Name: NF16704_high_4
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 43913516 - 43913673
Alignment:
| Q |
13 |
aatataaatggtcggttggttgtgaccggtctaaaactaatataatatgttaagattaaaacatttttaaagtgtgttgtctgctcttcttcgtttgttt |
112 |
Q |
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| T |
43913516 |
aatataaatggtcggttggttgtgaccggtctaaaactaatataatatgttaagattaaaacatttttaaagtgtgttgtctgctcttcttcgtttgttt |
43913615 |
T |
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| Q |
113 |
tccttagtattcgatagtcagcatgatcgctccatcctttctcaaatgattattaaag |
170 |
Q |
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| T |
43913616 |
tccttagtattcgatagtcagcatgatcgctccatcctttctcaaatgattattaaag |
43913673 |
T |
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Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 161 - 342
Target Start/End: Original strand, 43914817 - 43914999
Alignment:
| Q |
161 |
attattaaagattagtgggattattttcgtcttttcccacatacagtaccaagtcttctgtctgggtggaattcgcaagggtatgtaggtttatctgctc |
260 |
Q |
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| T |
43914817 |
attattaaagattagtgggattattttcctcttttcccacatacagtgccaagtcttctgtctgggtggaattagcaagggtatgtaggtttatctgctc |
43914916 |
T |
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| Q |
261 |
caatgttgagagacagatatttattaaggttgtatcatagtct-ctatgtatttataggtctagttagctccattaagtctag |
342 |
Q |
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| T |
43914917 |
caatgttgagagacagatatttattaaggttgtatcagagtctcctatgtatttataggtctagttagctccattaggtctag |
43914999 |
T |
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