View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16704_high_5 (Length: 338)
Name: NF16704_high_5
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 17120444 - 17120545
Alignment:
| Q |
222 |
catattcatgatatggttgttatcaaagaaagggcaaagaaacttggaagtcataactgaaggattcgtttctaccaaaccatgtttatcaaccaaaaga |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17120444 |
catattcatgatatggttgttatcaaagaaagggctaagaaacttggaagtcataactgaaggattcgtttctaccaaaccatgtttatcaaccaaaaga |
17120543 |
T |
|
| Q |
322 |
tt |
323 |
Q |
| |
|
|| |
|
|
| T |
17120544 |
tt |
17120545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 17120260 - 17120343
Alignment:
| Q |
38 |
tacctttcaaaattataagagatcgatatagtagaaaaagacaaattttagatctctatgttgctggttgagacatcctcctct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17120260 |
tacctttcaaaattataagagatcgatatagtaggaaaagacaaagtttagatctctatgttgctggttgagacatcctcctct |
17120343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10184808 - 10184779
Alignment:
| Q |
1 |
aggtgaattctagccattagactacctgac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10184808 |
aggtgaattctagccattagactacctgac |
10184779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13539971 - 13539942
Alignment:
| Q |
1 |
aggtgaattctagccattagactacctgac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13539971 |
aggtgaattctagccattagactacctgac |
13539942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45198105 - 45198077
Alignment:
| Q |
1 |
aggtgaattctagccattagactacctga |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45198105 |
aggtgaattctagccattagactacctga |
45198077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University