View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16704_high_7 (Length: 279)
Name: NF16704_high_7
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 4238130 - 4238284
Alignment:
| Q |
8 |
ccaagaatattacaataacgtaaaatatgaaaccgaaaataaatgaaagctcacacaaaacttttctttaattcaccatagtaaatgcaggagtaatgca |
107 |
Q |
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| T |
4238130 |
ccaaaaatattacaacaacgtaaaatatgaaaccgaaaataaatgaaagctcacacaaaacttttctttaattcaccatagtaaatgcaggtgtaatgca |
4238229 |
T |
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| Q |
108 |
acacaaaccttattttggttgtgctgcatgtaaatctgcttgatttcacaactaa |
162 |
Q |
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| T |
4238230 |
aaacaaaccttattttggttgtgctgtatttaaatctgcttgatttcacaactaa |
4238284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 4252465 - 4252514
Alignment:
| Q |
50 |
atgaaagctcacacaaaacttttctttaattcaccatagtaaatgcagga |
99 |
Q |
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| T |
4252465 |
atgaaagttcacacaaaacttttatttaattcagcataatagatgcagga |
4252514 |
T |
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