View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16704_high_8 (Length: 268)
Name: NF16704_high_8
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 4228096 - 4228029
Alignment:
| Q |
88 |
gggtaaaggtcaaatgttataatctaaggaccaaatacatttgacgtttcgaatcttttttgtttata |
155 |
Q |
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| T |
4228096 |
gggtaaaggtcaaatgttataatctaaggaccaaatacatttgatgtttcgaatcttttttgtttata |
4228029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 4227747 - 4227681
Alignment:
| Q |
154 |
tattttattacaacaaagaaaatacattttattgggtcgtt----aattttgaatgaaatgccttga |
216 |
Q |
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| T |
4227747 |
tattttattacaacaaagaaaatacattttattgggtcgttaattaattttgaatgaaatgcattga |
4227681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 4228163 - 4228131
Alignment:
| Q |
19 |
tttcgatcgcatctgcaataacaaaatatacgc |
51 |
Q |
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| T |
4228163 |
tttcgatcgcatctgctataacaaaatatacgc |
4228131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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