View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16704_high_9 (Length: 266)
Name: NF16704_high_9
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_high_9 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 28140508 - 28140256
Alignment:
| Q |
1 |
tctaccatcacatacaaatgtgacacatggccatgtgcccttctccatcccacctaacactctctttcacatggacaaaattactaaaatgtcctttcac |
100 |
Q |
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| T |
28140508 |
tctaccatcccacacaaatgtgatacgtggccatgtgcccttctccatccaacctaacactctctttcacatgaacaaaattactaaaatgtcctttcgc |
28140409 |
T |
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| Q |
101 |
atgacatgtataataggggtaggnnnnnnngggtgtcaacataatgaaacaaagatatggatgtcaactgagcgaaagttgggagtactttctcgctccc |
200 |
Q |
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| T |
28140408 |
atgacatgtacaataggggtaggaaaaaaagggtgtcaacataatgaaacaaagatatggatgtcaactgggcgagagttgggagtactttctcgctccc |
28140309 |
T |
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| Q |
201 |
atcccccgttttattcacctcctcgctctccaccctagggagtttttcttctc |
253 |
Q |
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| T |
28140308 |
atcccccgtattatttacctcctcgctctccaccctaggaagtttttcttctc |
28140256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 29477530 - 29477435
Alignment:
| Q |
16 |
aaatgtgacacatggccatgtgcccttctccatcccacctaacactctctttcacatgg-acaaaattactaaaatgtcctttcacatgacatgta |
110 |
Q |
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| T |
29477530 |
aaatgtgacacgtggctatgtgaccctcaccaccccacctaacactctcttttacatggtgtgaaattattaaaatgtcctttcacatgagatgta |
29477435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 30474130 - 30474100
Alignment:
| Q |
45 |
ccatcccacctaacactctctttcacatgga |
75 |
Q |
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| T |
30474130 |
ccatcccacctaacactctctttcacatgga |
30474100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 46830 - 46887
Alignment:
| Q |
45 |
ccatcccacctaacactctctttcacatggacaaaattactaaaatgtcctttcacat |
102 |
Q |
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| T |
46830 |
ccatcccatctaacactctctttcacatgggtgaaaatactaaaatgtcatttcacat |
46887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 29827454 - 29827353
Alignment:
| Q |
1 |
tctaccatcacatacaaatgtgacacatggccatgtgcccttctccatcccacctaacactctctttcacatg-gacaaaattactaaaatgtcctttca |
99 |
Q |
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||||||||||||||||||||||| | |||| ||||||| || ||| |||||||||| |||||||||||| ||| ||||||| ||||| | |||||| |
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| T |
29827454 |
tctaccatcacatacaaatgtgatgcggggccctgtgccc-tcaccactccacctaaca--ctctttcacatgagacgaaattacaaaaatattctttca |
29827358 |
T |
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| Q |
100 |
catga |
104 |
Q |
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||||| |
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| T |
29827357 |
catga |
29827353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12404197 - 12404298
Alignment:
| Q |
1 |
tctaccatcacatacaaatgtgacacatggccatgtgcccttctccatcccacctaacactctctttcacat-ggacaaaattactaaaatgtcctttca |
99 |
Q |
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||||||| |||| || ||| |||||| ||| ||||| || || ||||||||||||||| |||||||| || ||| |||||||||||||| || ||||| |
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| T |
12404197 |
tctaccaccacacactaatatgacacgtggggatgtgaccctcaccatcccacctaaca--ctctttcaaatgggataaaattactaaaatatcttttca |
12404294 |
T |
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| Q |
100 |
catg |
103 |
Q |
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|||| |
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| T |
12404295 |
catg |
12404298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 9450517 - 9450445
Alignment:
| Q |
52 |
acctaacactctctttcacat-ggacaaaattactaaaatgtcctttcacatgacatgtataataggggtagg |
123 |
Q |
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|||||||||||||||||| || ||| || ||||||||||||| ||||| || |||||||||||||||||| |
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| T |
9450517 |
acctaacactctctttcatataggatgaacttactaaaatgtcatttcaaataggatgtataataggggtagg |
9450445 |
T |
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