View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16704_low_11 (Length: 258)
Name: NF16704_low_11
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_low_11 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 18153225 - 18152983
Alignment:
| Q |
1 |
ttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatattt |
100 |
Q |
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| T |
18153225 |
ttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatattt |
18153126 |
T |
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| Q |
101 |
gatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatggacgtt |
200 |
Q |
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| T |
18153125 |
gatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatggacgtt |
18153026 |
T |
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| Q |
201 |
ccagtggacattatgcacttgttacacaacaaccccttaaagg |
243 |
Q |
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| T |
18153025 |
ccagtggacattatgcacttgttacacaacaaccccttaaagg |
18152983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 1785691 - 1785753
Alignment:
| Q |
181 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaagg |
243 |
Q |
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| T |
1785691 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaagg |
1785753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 222487 - 222716
Alignment:
| Q |
5 |
agaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatg |
104 |
Q |
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| T |
222487 |
agaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatccatgggtatttgaacccgagtacccgggaaaaagcagaatatttgatg |
222586 |
T |
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| Q |
105 |
gaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatggacgttccag |
204 |
Q |
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| T |
222587 |
gaagaacaggcgacccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgatgagaaaattcatgggcgttctac |
222686 |
T |
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| Q |
205 |
tggacattatgcacttgttacacaacaacc |
234 |
Q |
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| T |
222687 |
tgggccctactcacttgttacacaacaacc |
222716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 23937344 - 23937268
Alignment:
| Q |
167 |
attcatcaagttgatgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaagg |
243 |
Q |
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| T |
23937344 |
attcatcaagttgatgataaaatacatggacgtttcagtggacattatgcacttgttacacaacaaccccttaaagg |
23937268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 138
Target Start/End: Original strand, 47586031 - 47586066
Alignment:
| Q |
103 |
tggaagaacagggaatctttttgaacagcctgttat |
138 |
Q |
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| T |
47586031 |
tggaagaacagggaatctttttgaacagcctgttat |
47586066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 22998273 - 22998200
Alignment:
| Q |
35 |
gccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatggaag |
108 |
Q |
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| T |
22998273 |
gccaataaagaaacatccaatccatgaatatttcagcctaagtatccgggaaaaagcgaaatattttatggaag |
22998200 |
T |
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