View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16704_low_14 (Length: 250)
Name: NF16704_low_14
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 50667700 - 50667919
Alignment:
| Q |
18 |
gatgtaacaacagaatatatttgtcgttggttgatcgtagcgaccggtgagaatgccgaagctgttgtgcctaatattgaaggcgtagatgaatttggag |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50667700 |
gatgtaacaacagaatatgtttgtcgttggttgatcgtagcgaccggtgagaatgccgaagctgttgtgcctaatattgaaggcgtagatgaatttggag |
50667799 |
T |
|
| Q |
118 |
gagttataaggcatacaagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50667800 |
gagttataaggcatacaagtttgtataaaagtggtgaagagtttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgttt |
50667899 |
T |
|
| Q |
218 |
agatctttgtaaccatgatg |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
50667900 |
agatctttgtaaccatgatg |
50667919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 888595 - 888403
Alignment:
| Q |
45 |
tggttgatcgtagcgaccggtgagaatgccgaagctgttgtgcctaatattgaaggcgtagatgaatttggaggagttataaggcatacaagtttgtata |
144 |
Q |
| |
|
||||||||||| || ||||| |||||||| || || ||||| || | |||||||| || ||||| |||| || ||| |||||||| |||||||||| |
|
|
| T |
888595 |
tggttgatcgttgcaaccggagagaatgctgaggcggttgtacccgagattgaaggagttgatgagtttgttggtagtattaggcatactagtttgtata |
888496 |
T |
|
| Q |
145 |
aaagtggtgaagagtttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaaccatgatg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
888495 |
aaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaattcaggtatggaagtttgtttggatctttgtaatcatgatg |
888403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 29857545 - 29857478
Alignment:
| Q |
159 |
tttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | | |||||||| |
|
|
| T |
29857545 |
tttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctttg |
29857478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 17408131 - 17408184
Alignment:
| Q |
180 |
gttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaaccat |
233 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| | | ||||||||||||||| |
|
|
| T |
17408131 |
gttgttggatgtggaaattctggcatggaagtttctcttgatctttgtaaccat |
17408184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 32790064 - 32790129
Alignment:
| Q |
168 |
aagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaaccat |
233 |
Q |
| |
|
||||| |||||||| || || ||||| ||||| |||||||| ||||||||||| ||||| |||||| |
|
|
| T |
32790064 |
aagaatgttttggtggtggggtgtggaaattcaggtatggaggtttgtttagacctttgcaaccat |
32790129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University