View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16704_low_16 (Length: 237)

Name: NF16704_low_16
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16704_low_16
NF16704_low_16
[»] chr5 (5 HSPs)
chr5 (1-237)||(26621284-26621519)
chr5 (36-81)||(2209479-2209524)
chr5 (178-218)||(3926302-3926342)
chr5 (178-217)||(42837617-42837656)
chr5 (194-237)||(2209654-2209698)
[»] chr4 (15 HSPs)
chr4 (143-233)||(17120273-17120361)
chr4 (178-237)||(40714813-40714873)
chr4 (36-81)||(40714991-40715036)
chr4 (36-81)||(42555258-42555303)
chr4 (178-237)||(23626948-23627008)
chr4 (180-237)||(42555423-42555481)
chr4 (36-81)||(51357115-51357160)
chr4 (37-81)||(36464963-36465007)
chr4 (178-237)||(38951730-38951789)
chr4 (178-216)||(19841838-19841876)
chr4 (36-81)||(8819451-8819495)
chr4 (52-81)||(17120422-17120451)
chr4 (185-229)||(51357284-51357329)
chr4 (178-229)||(8819281-8819333)
chr4 (178-229)||(36464800-36464852)
[»] scaffold0057 (1 HSPs)
scaffold0057 (143-237)||(66592-66684)
[»] chr8 (4 HSPs)
chr8 (178-236)||(6870592-6870651)
chr8 (178-217)||(11481525-11481564)
chr8 (47-81)||(31005961-31005995)
chr8 (178-237)||(31006115-31006175)
[»] chr1 (7 HSPs)
chr1 (101-237)||(38264315-38264448)
chr1 (143-237)||(2191776-2191870)
chr1 (147-237)||(25987443-25987530)
chr1 (178-217)||(17562764-17562803)
chr1 (178-217)||(29678297-29678336)
chr1 (180-217)||(31585211-31585248)
chr1 (143-171)||(11894341-11894369)
[»] scaffold0041 (1 HSPs)
scaffold0041 (36-81)||(62417-62462)
[»] chr7 (12 HSPs)
chr7 (40-81)||(15954774-15954815)
chr7 (36-81)||(40910632-40910677)
chr7 (178-237)||(31457372-31457432)
chr7 (178-237)||(36298883-36298943)
chr7 (178-217)||(2944058-2944097)
chr7 (178-237)||(15954050-15954110)
chr7 (178-233)||(22519165-22519221)
chr7 (178-217)||(5973069-5973108)
chr7 (186-237)||(30541449-30541500)
chr7 (36-81)||(47924915-47924960)
chr7 (143-171)||(31457313-31457341)
chr7 (143-171)||(38440492-38440520)
[»] chr6 (7 HSPs)
chr6 (176-234)||(642002-642061)
chr6 (178-230)||(8576858-8576911)
chr6 (178-233)||(17930218-17930274)
chr6 (178-237)||(28582248-28582308)
chr6 (178-217)||(10788584-10788623)
chr6 (36-81)||(10409102-10409146)
chr6 (143-171)||(7245533-7245561)
[»] chr3 (10 HSPs)
chr3 (182-217)||(48251496-48251531)
chr3 (178-217)||(3778890-3778929)
chr3 (178-217)||(5295316-5295355)
chr3 (36-74)||(4127934-4127971)
chr3 (180-237)||(13826018-13826075)
chr3 (178-228)||(25874675-25874725)
chr3 (47-81)||(26187878-26187912)
chr3 (143-237)||(36584449-36584541)
chr3 (38-82)||(5295155-5295199)
chr3 (178-233)||(32836786-32836842)
[»] chr2 (1 HSPs)
chr2 (178-230)||(5704711-5704764)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 26621284 - 26621519
Alignment:
Q  1 aataaatatgaaatccgacctatccatatttgcactgttaattttatttagctgaaatttaaaaacaaaagttcatcacatatannnnnnnnnnnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                    
T  26621284 aataaatatgaaatccgacctatccatatttgcactgttaattttatttagatgaaatttaaaaacaaaagttcatcacatatattttcttttctttttt 26621383  T
Q  101 gcaaagcataatattcatacattacaataacnnnnnnnnnttattgactcaacaaaaacataaataaagtttctgactgatttaacaaaagcataaataa 200  Q
    |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26621384 gcaaagcataatattcatacattacaataacaaaaaaaa-ttattgactcaacaaaaacataaataaagtttcttactgatttaacaaaagcataaataa 26621482  T
Q  201 agctcatcatattcaacgaaacaaagcttcttgcttc 237  Q
    |||||||||||||| || |||||||| ||||||||||    
T  26621483 agctcatcatattctacaaaacaaagtttcttgcttc 26621519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 2209479 - 2209524
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||||||| |||||||  ||||||||||||||||||||||||||    
T  2209479 tgttaattttttttagctagaatttaaaaacaaaagttcatcacat 2209524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 3926302 - 3926342
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaacg 218  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  3926302 tgatttaacaaaagcatgagtaaagctcatcatattcaacg 3926342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 42837617 - 42837656
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac 217  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  42837617 tgatttaacaaaaacataagtaaagctcatcatattcaac 42837656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 2209654 - 2209698
Alignment:
Q  194 taaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||    
T  2209654 taaataaagcttatcatattcaacaaaaacaaagcttcttgcttc 2209698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 17120361 - 17120273
Alignment:
Q  143 attgactcaacaaaaacataaataaagtttctgactgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttg 233  Q
    ||||||||||||||||| |||||||||||  |   ||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  17120361 attgactcaacaaaaacctaaataaagttctt---tgatttaacaaaagcataaataaagctcatcatattcaacaaaaacaaagtttcttg 17120273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 40714873 - 40714813
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    ||||||||||||| ||| ||||||||||||||||||||||  |||||||||||||||||||    
T  40714873 tgatttaacaaaaacattaataaagctcatcatattcaacaaaaacaaagcttcttgcttc 40714813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 40715036 - 40714991
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||    
T  40715036 tgttcattttttttagctgaaatttaaaaacaaaagttcatcacat 40714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 42555258 - 42555303
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  42555258 tgttaattttttttagctgaaatttaaaaacaaaagttcataacat 42555303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 23626948 - 23627008
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    |||||||||||||||||| ||||||||||||||||| |||  ||||||| |||||||||||    
T  23626948 tgatttaacaaaagcatatataaagctcatcatatttaacaaaaacaaaacttcttgcttc 23627008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 42555423 - 42555481
Alignment:
Q  180 atttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    ||||||||||||||||||||||| | ||||||||||||  ||||||||||| |||||||    
T  42555423 atttaacaaaagcataaataaaggttatcatattcaacaaaaacaaagcttattgcttc 42555481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 51357115 - 51357160
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    ||||||| || |||||||||||||||||||| ||||||||||||||    
T  51357115 tgttaatattttttagctgaaatttaaaaaccaaagttcatcacat 51357160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 36465007 - 36464963
Alignment:
Q  37 gttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||| || |||||||||||||||||||| ||||||||||||||    
T  36465007 gttaatattttttagctgaaatttaaaaaccaaagttcatcacat 36464963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 38951730 - 38951789
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    ||||||||||||| ||||| ||||||||||||||||||||  ||||||||| |||||||||    
T  38951730 tgatttaacaaaaacataagtaaagctcatcatattcaacaaaaacaaagc-tcttgcttc 38951789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 19841838 - 19841876
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaa 216  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  19841838 tgatttaacaaaagcataagtaaagttcatcatattcaa 19841876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 8819495 - 8819451
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||    
T  8819495 tgttaatttt-tttaggtgaaatttaaaaaccaaagttcatcacat 8819451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 81
Target Start/End: Complemental strand, 17120451 - 17120422
Alignment:
Q  52 ctgaaatttaaaaacaaaagttcatcacat 81  Q
    ||||||||||||||||||||||||||||||    
T  17120451 ctgaaatttaaaaacaaaagttcatcacat 17120422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 51357284 - 51357329
Alignment:
Q  185 acaaaagcataaataaagctcatcatattcaac-gaaacaaagctt 229  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||    
T  51357284 acaaaagtataaataaagctcatcatattcaacaaaaacaaagctt 51357329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 8819333 - 8819281
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagctt 229  Q
    |||||| ||||||| ||||||||||||||| |||||||||  |||||||||||    
T  8819333 tgatttgacaaaagtataaataaagctcataatattcaacaaaaacaaagctt 8819281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 36464852 - 36464800
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagctt 229  Q
    |||||| ||||||| ||||| |||||||||||||||||||  |||||||||||    
T  36464852 tgatttgacaaaagtataaacaaagctcatcatattcaacaaaaacaaagctt 36464800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 66592 - 66684
Alignment:
Q  143 attgactcaacaaaaacataaataaagtttctgactgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    |||||||||||||||||||||||||||||  |   |||||| ||||||| ||||||||||||||||||||||| |  ||||||| |||||||||||    
T  66592 attgactcaacaaaaacataaataaagttctt---tgatttgacaaaagtataaataaagctcatcatattcaccaaaaacaaaacttcttgcttc 66684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 6870651 - 6870592
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgctt 236  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  6870651 tgatttaacaaaagcataaataaagctcatcatattcaacaaaaacaaaacttcttgctt 6870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 11481525 - 11481564
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac 217  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  11481525 tgatttaacaaaaacataagtaaagctcatcatattcaac 11481564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 31005961 - 31005995
Alignment:
Q  47 tttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||||||||||||||||||||||||||| ||||    
T  31005961 tttagctgaaatttaaaaacaaaagttcattacat 31005995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 31006115 - 31006175
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    |||||| | |||||||||||||||| | ||||||||||||  |||||||| ||||||||||    
T  31006115 tgatttgataaaagcataaataaagattatcatattcaacaaaaacaaagtttcttgcttc 31006175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 38264448 - 38264315
Alignment:
Q  101 gcaaagcataatattcatacattacaataacnnnnnnnnnttattgactcaacaaaaacataaataaagtttctgactgatttaacaaaagcataaataa 200  Q
    ||||| |||||||||||||||||||||||||         | |||||||||||||||| ||||||||||||  |   |||||| ||||||||||||||||    
T  38264448 gcaaaacataatattcatacattacaataacaacaaaga-tcattgactcaacaaaaatataaataaagttctt---tgatttgacaaaagcataaataa 38264353  T
Q  201 agctcatcatattcaa-cgaaacaaagcttcttgcttc 237  Q
    || | |||||||||||   |||||||| ||||||||||    
T  38264352 agattatcatattcaattaaaacaaagtttcttgcttc 38264315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 2191870 - 2191776
Alignment:
Q  143 attgactcaacaaaaacataaataaagtttctgactgatttaacaaaagcataaataaa--gctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    |||||||||||||||||||||||||||||  |   |||||| ||||||| |||||||||   |||||||||||||||  ||||||| |||||||||||    
T  2191870 attgactcaacaaaaacataaataaagttctt---tgatttgacaaaagtataaataaaactctcatcatattcaacaaaaacaaaacttcttgcttc 2191776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 25987443 - 25987530
Alignment:
Q  147 actcaacaaaaacataaataaagtttctgactgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    ||||||||||||||||||||||||| || |  ||| |||||||| ||||| |||||||| |||||||||||  ||||||||| |||||||||    
T  25987443 actcaacaaaaacataaataaagtt-ctta--gatataacaaaaacataagtaaagctcgtcatattcaacaaaaacaaagc-tcttgcttc 25987530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 17562803 - 17562764
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac 217  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  17562803 tgatttaacaaaaacataagtaaagctcatcatattcaac 17562764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 29678336 - 29678297
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac 217  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  29678336 tgatttaacaaaagtataagtaaagctcatcatattcaac 29678297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 31585248 - 31585211
Alignment:
Q  180 atttaacaaaagcataaataaagctcatcatattcaac 217  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  31585248 atttaacaaaaacataagtaaagctcatcatattcaac 31585211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 11894341 - 11894369
Alignment:
Q  143 attgactcaacaaaaacataaataaagtt 171  Q
    |||||||||||||||||||||||||||||    
T  11894341 attgactcaacaaaaacataaataaagtt 11894369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 62417 - 62462
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||    
T  62417 tgttaattttttttagctaaaatttaaaaacaaaagttcatcacat 62462  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 15954815 - 15954774
Alignment:
Q  40 aattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  15954815 aattttatttagcttaaatttaaaaacaaaagttcatcacat 15954774  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 40910677 - 40910632
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||    
T  40910677 tgttaattttttttagctaaaatttaaaaacaaaagttcatcacat 40910632  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 31457372 - 31457432
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    |||||||||||||| |||||||||| ||||||||||||||  ||||||| |||||||||||    
T  31457372 tgatttaacaaaagtataaataaagttcatcatattcaacaaaaacaaaacttcttgcttc 31457432  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 36298883 - 36298943
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    |||||| ||||||| |||||||||||||||||||||||||  ||||||||||| |||||||    
T  36298883 tgatttgacaaaagtataaataaagctcatcatattcaacaaaaacaaagcttattgcttc 36298943  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 2944097 - 2944058
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac 217  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  2944097 tgatttaacaaaagcataaataaaactcatcatattcaac 2944058  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 15954110 - 15954050
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    ||||||||||||||||||||||||||| ||||||| ||||  ||| ||| |||||||||||    
T  15954110 tgatttaacaaaagcataaataaagctgatcatatccaacaaaaataaaacttcttgcttc 15954050  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 22519221 - 22519165
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttg 233  Q
    ||||||||||||||||||||||||| | ||||||||||||  |||||||| ||||||    
T  22519221 tgatttaacaaaagcataaataaagtttatcatattcaacaaaaacaaagtttcttg 22519165  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 5973069 - 5973108
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac 217  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  5973069 tgatttaacaaaaacataagtaaagctcatcatattcaac 5973108  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 30541500 - 30541449
Alignment:
Q  186 caaaagcataaataaagctcatcatattcaacgaaacaaagcttcttgcttc 237  Q
    ||||||| ||| |||||||||||||||||||| |||||||| ||||| ||||    
T  30541500 caaaagcttaagtaaagctcatcatattcaacaaaacaaagtttcttacttc 30541449  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 47924915 - 47924960
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    ||||||| || ||| ||| |||||||||||||||||||||||||||    
T  47924915 tgttaatatttttttgctaaaatttaaaaacaaaagttcatcacat 47924960  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 31457313 - 31457341
Alignment:
Q  143 attgactcaacaaaaacataaataaagtt 171  Q
    |||||||||||||||||||||||||||||    
T  31457313 attgactcaacaaaaacataaataaagtt 31457341  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 38440520 - 38440492
Alignment:
Q  143 attgactcaacaaaaacataaataaagtt 171  Q
    |||||||||||||||||||||||||||||    
T  38440520 attgactcaacaaaaacataaataaagtt 38440492  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 642061 - 642002
Alignment:
Q  176 actgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgc 234  Q
    ||||||||||||||||| ||| |||| |||||||||||||||  ||||||||||||||||    
T  642061 actgatttaacaaaagcttaagtaaaactcatcatattcaacaaaaacaaagcttcttgc 642002  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 8576858 - 8576911
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttc 230  Q
    ||||||||||||| ||||| ||||||||||||||||||||  ||||||||||||    
T  8576858 tgatttaacaaaaacataagtaaagctcatcatattcaacaaaaacaaagcttc 8576911  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 17930274 - 17930218
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttg 233  Q
    ||||| ||||||| ||||||||||| ||||||||||||||  |||||||||||||||    
T  17930274 tgattcaacaaaaacataaataaagttcatcatattcaacaaaaacaaagcttcttg 17930218  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 28582248 - 28582308
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaacgaa-acaaagcttcttgcttc 237  Q
    ||||||||||||| ||||||||||| |||||||||||||| || |||||| || |||||||    
T  28582248 tgatttaacaaaaacataaataaagttcatcatattcaacaaatacaaagttttttgcttc 28582308  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 10788584 - 10788623
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac 217  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  10788584 tgatttaacaaaagcataagtaaagttcatcatattcaac 10788623  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 10409146 - 10409102
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||    
T  10409146 tgttaatttt-tttagctgaaaattaaaaactaaagttcatcacat 10409102  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 7245561 - 7245533
Alignment:
Q  143 attgactcaacaaaaacataaataaagtt 171  Q
    |||||||||||||||||||||||||||||    
T  7245561 attgactcaacaaaaacataaataaagtt 7245533  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 48251531 - 48251496
Alignment:
Q  182 ttaacaaaagcataaataaagctcatcatattcaac 217  Q
    ||||||||||||||||||||||||||||||||||||    
T  48251531 ttaacaaaagcataaataaagctcatcatattcaac 48251496  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 3778929 - 3778890
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac 217  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  3778929 tgatttaaaaaaagcataagtaaagctcatcatattcaac 3778890  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 5295316 - 5295355
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac 217  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  5295316 tgatttaacaaaaacataactaaagctcatcatattcaac 5295355  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 4127934 - 4127971
Alignment:
Q  36 tgttaattttatttagctgaaatttaaaaacaaaagttc 74  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  4127934 tgttaatttt-tttagctgaaatttaaaaacaaaagttc 4127971  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 13826018 - 13826075
Alignment:
Q  180 atttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    ||||||||||||||||| ||||| ||||||||||||||  ||||||||| |||||||||    
T  13826018 atttaacaaaagcataagtaaagttcatcatattcaacaaaaacaaagc-tcttgcttc 13826075  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 25874725 - 25874675
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaacgaaacaaagct 228  Q
    ||||||||||||| ||||| |||| ||||||||||||||  ||||||||||    
T  25874725 tgatttaacaaaaacataagtaaaactcatcatattcaaaaaaacaaagct 25874675  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 26187878 - 26187912
Alignment:
Q  47 tttagctgaaatttaaaaacaaaagttcatcacat 81  Q
    |||||||||||||||||||||||| ||||||||||    
T  26187878 tttagctgaaatttaaaaacaaaaattcatcacat 26187912  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 36584449 - 36584541
Alignment:
Q  143 attgactcaacaaaaacataaataaagtttctgactgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttcttgcttc 237  Q
    ||||| |||| ||||||||||||||||||  |   |||||| ||||||  |||||||||| ||||||||||||||  |||||||| || |||||||    
T  36584449 attgattcaagaaaaacataaataaagttctt---tgatttgacaaaaatataaataaagttcatcatattcaacaaaaacaaagtttattgcttc 36584541  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 5295155 - 5295199
Alignment:
Q  38 ttaattttatttagctgaaatttaaaaacaaaagttcatcacata 82  Q
    |||||||| ||||||| ||||||| |||||||||||| |||||||    
T  5295155 ttaattttttttagctaaaatttagaaacaaaagttcttcacata 5295199  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 32836786 - 32836842
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaacgaaa-caaagcttcttg 233  Q
    ||||| || |||||||||||||||| |||||||||||||| |||  |||||||||||    
T  32836786 tgattgaaaaaaagcataaataaagttcatcatattcaacaaaagtaaagcttcttg 32836842  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 5704711 - 5704764
Alignment:
Q  178 tgatttaacaaaagcataaataaagctcatcatattcaac-gaaacaaagcttc 230  Q
    ||||||||||||| ||||| ||||||||||||||||||||  ||||||||||||    
T  5704711 tgatttaacaaaaacataagtaaagctcatcatattcaacaaaaacaaagcttc 5704764  T

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