View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16704_low_19 (Length: 202)
Name: NF16704_low_19
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_low_19 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 18342809 - 18342984
Alignment:
| Q |
12 |
cattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342809 |
cattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatga |
18342908 |
T |
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| Q |
112 |
atttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342909 |
atttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
18342984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 48288753 - 48288862
Alignment:
| Q |
12 |
cattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatga |
111 |
Q |
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|||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||| |||| | ||| |||||||||||||||||||||||||| |
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| T |
48288753 |
cattatcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataatt-gactcctaatcacttcagatctttctaaagatga |
48288847 |
T |
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| Q |
112 |
atttggtactgcttt |
126 |
Q |
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||||| |||| |||| |
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| T |
48288848 |
atttgatactccttt |
48288862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 36840582 - 36840757
Alignment:
| Q |
12 |
cattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840582 |
cattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatga |
36840681 |
T |
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| Q |
112 |
atttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840682 |
atttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
36840757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 164555 - 164380
Alignment:
| Q |
12 |
cattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatga |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
164555 |
cattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatga |
164456 |
T |
|
| Q |
112 |
atttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
187 |
Q |
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|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
164455 |
atttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
164380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 14249171 - 14249346
Alignment:
| Q |
12 |
cattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatga |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
14249171 |
cattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatga |
14249270 |
T |
|
| Q |
112 |
atttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
187 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14249271 |
atttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
14249346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 80 - 187
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
| Q |
80 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
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| Q |
180 |
ctcctatg |
187 |
Q |
| |
|
|||||||| |
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| T |
46699227 |
ctcctatg |
46699234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 873 - 733
Alignment:
| Q |
47 |
cgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaa |
146 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || |
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| T |
873 |
cgtttgagttctttacaagtacgtacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataa |
774 |
T |
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| Q |
147 |
tgtcaccaatataagcataccgtcgattactagctcctatg |
187 |
Q |
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||||||||||| |||||| || |||||||||||||||||| |
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| T |
773 |
cgtcaccaatatgagcatatcggcgattactagctcctatg |
733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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