View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16704_low_4 (Length: 425)
Name: NF16704_low_4
Description: NF16704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16704_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 203 - 414
Target Start/End: Complemental strand, 4227438 - 4227228
Alignment:
| Q |
203 |
tggatggttgctatagaccacgcaactgcttagagagacagagaccaaggaaccgaatataatccatgcacgcaatatggatggtggaatatgttcaatg |
302 |
Q |
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| T |
4227438 |
tggatggttgctatagaccacgcaactgcttcgagagacagagaccaaggaaccgaatataatccatgcacgcaatatggatggtggaatatgttcaatg |
4227339 |
T |
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| Q |
303 |
gtcaaataggaaaacaaaacacaaagagaagaataaaacattaggtgtagcactttatccagagaagaagcaaagattactctctcaattccttcctaat |
402 |
Q |
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| T |
4227338 |
gtcaaataggaaaacaaaacacaaagagaagaataaaacatta-gtctagcactttatccagacaagaagcaaagattactctctcaattccttcctaat |
4227240 |
T |
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| Q |
403 |
tctcagaattat |
414 |
Q |
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||||||| |||| |
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| T |
4227239 |
tctcagagttat |
4227228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4227635 - 4227465
Alignment:
| Q |
1 |
tagcaagagtgtttgtgcatgcatattaaaaaatcatttgtgtgcacacatttttgtcatataaatatgatactagtactttgaaagacttcaattgagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
4227635 |
tagcaagagtgtttgtgcatgcatattaaaaaatcatttgtgtgcacacatttttgtcatataaat--gata---gtactttgaaagacttcaattgagt |
4227541 |
T |
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| Q |
101 |
tagttcagctcaactaatattgattctgtttgacaaaatgagaggtccacatagatcatggcaaggctagtccatt |
176 |
Q |
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| T |
4227540 |
tagttcagctcaactaatattgattctgtttgacaaaatgagaggtccacatagatcatggcaaggctagtccatt |
4227465 |
T |
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