View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16705_high_2 (Length: 355)

Name: NF16705_high_2
Description: NF16705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16705_high_2
NF16705_high_2
[»] chr6 (5 HSPs)
chr6 (16-355)||(30956876-30957215)
chr6 (20-214)||(30962704-30962899)
chr6 (20-214)||(30932360-30932555)
chr6 (291-355)||(30946660-30946724)
chr6 (241-293)||(30946773-30946827)


Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 30957215 - 30956876
Alignment:
Q  16 caattttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatgataaattcttaaactatgaattacagctgttaggggatcaaagtcttgca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30957215 caattttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatgataaattcttaaactatgaattacagctgttaggggatcaaagtcttgca 30957116  T
Q  116 atttcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatgaaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30957115 atttcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatgaaaa 30957016  T
Q  216 cagtgacagagttggcatttcaaaatatagtaatatgattcatattagtgattttatcacatgttttgagccacttgtagacatcttgcaagagactcgt 315  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30957015 cagtgacagagttagcatttcaaaatatagtaatatgattcatattagtgattttatcacatgttttgagccacttgtagacatcttgcaagaaactcgt 30956916  T
Q  316 ctgttcattgaagtttaccactttgagtttacataattat 355  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30956915 ctgttcattgaagtttaccactttgagtttacataattat 30956876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 30962899 - 30962704
Alignment:
Q  20 tttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatga-taaattcttaaactatgaattacagctgttaggggatcaaagtcttgcaatt 118  Q
    |||||||| |||||| ||   |||||||||||| ||||||||||||| |||| |||||||| | ||||||||| || ||| |||||||||||||  ||||    
T  30962899 tttaatgcaaggcacggaacatgtcactcttgctcaatttgcaatgagtaaaatcttaaacaaggaattacagatgctagtggatcaaagtcttcaaatt 30962800  T
Q  119 tcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatgaaa 214  Q
    ||||||||| |||||||||| ||||||||||||||| |||| ||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  30962799 tcttttaataaaaatgtagtcgaaatgataacaacagtgactgagttagcatttcagtgtgtgcagtgtcccaaggaactcaggccaaccatgaaa 30962704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 30932555 - 30932360
Alignment:
Q  20 tttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatga-taaattcttaaactatgaattacagctgttaggggatcaaagtcttgcaatt 118  Q
    |||||||| |||||||||| ||||| |||||||| |||||||| ||| |||| |||||||| | |||||||||||| ||| ||| |||||||||  ||||    
T  30932555 tttaatgcaaggcaccgagcgtgtcgctcttgccgaatttgcattgagtaaaatcttaaacaaggaattacagctgctagtggaccaaagtcttcaaatt 30932456  T
Q  119 tcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatgaaa 214  Q
    ||||||||  |||||||||| ||||||||||||||  |||| ||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  30932455 tcttttaacaaaaatgtagtggaaatgataacaacggtgactgagttagcatttcagtgtgtgcagtgtcccaaggaactcaggccaaccatgaaa 30932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 30946724 - 30946660
Alignment:
Q  291 tgtagacatcttgcaagagactcgtctgttcattgaagtttaccactttgagtttacataattat 355  Q
    |||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||    
T  30946724 tgtagacatcttgcaagaaacttgtctattctttgaagtttaccactttgagtttacataattat 30946660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 30946827 - 30946773
Alignment:
Q  241 tatagtaatatgattcatattagtgattttatcaca--tgttttgagccacttgt 293  Q
    |||||||||| ||||||| |||||||||||| ||||  |||||||||||||||||    
T  30946827 tatagtaatacgattcattttagtgattttaccacatctgttttgagccacttgt 30946773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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