View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16705_high_3 (Length: 305)
Name: NF16705_high_3
Description: NF16705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16705_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 30956451 - 30956726
Alignment:
| Q |
12 |
aatactgattttggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattctgcg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30956451 |
aatactgattttggaacgtcatttgcagcgtgtgtgcacctgccgcatttgcggtggttagagccaaccactaaaagaagcgccttgagggaattctgcg |
30956550 |
T |
|
| Q |
112 |
gctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttaccatttattttattccatgattttctttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30956551 |
gctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaactgccgtaattgttactatttattttattccatgattttctttg |
30956650 |
T |
|
| Q |
212 |
aagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatcacgtcacccatttaggag |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30956651 |
aagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaatcacgtcacccatttaggag |
30956726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 287
Target Start/End: Original strand, 30946272 - 30946490
Alignment:
| Q |
69 |
ttagagccaaccactaaaagaagcgccttgagggaattctgcggctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaaac |
168 |
Q |
| |
|
||||||||||| || || ||||||| ||||| |||| |||||||||| || ||||| || |||||||| | ||||||| ||| | | |||||||||| |
|
|
| T |
30946272 |
ttagagccaacagctggaataagcgccaagagggcattccgcggctgtttatattttgcggtatttgactttggtcatggcattcgcggcggttccaaac |
30946371 |
T |
|
| Q |
169 |
tgccgtaattgttaccatttattttattccatgattttctttgaagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtcaat |
268 |
Q |
| |
|
|||| |||||||| |||||||||||||| | | ||||||| |||||||||||||| ||||| | ||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
30946372 |
tgccataattgttgccatttattttattgaaataatttcttttaagtattcatttttaccacttagggtagcaagataaggacaacaatttaaggtcaat |
30946471 |
T |
|
| Q |
269 |
cacgtcacccatttaggag |
287 |
Q |
| |
|
|| |||| ||| ||||||| |
|
|
| T |
30946472 |
catgtcaaccagttaggag |
30946490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University