View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16705_high_4 (Length: 271)
Name: NF16705_high_4
Description: NF16705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16705_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 1629229 - 1628980
Alignment:
| Q |
8 |
attattctacatagttatctgtaattaaattcattgtaattctaaaaagaaaatgtgtcaatattctttaatttgtatattgagagagatat---tattc |
104 |
Q |
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| T |
1629229 |
attattctacatagttatttgtaattaaattcattgtaattcttaaaagaaaatgtgtcaatattctttaatttgtatattgagagagatataattattc |
1629130 |
T |
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| Q |
105 |
atattctttaattttgtactacttaacaagttcaactttgatgatccgacggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagc |
204 |
Q |
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| T |
1629129 |
atattctttaattttgtactactttacaagttcaactttgatgatccagcggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagc |
1629030 |
T |
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| Q |
205 |
atcctgtcctttaaaaaatatatataaaattaagtcctatgcgcgaggtg |
254 |
Q |
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| T |
1629029 |
atcttgtcattttaaaaatatatataaaattaagtcctatgcgcgaggtg |
1628980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 10821438 - 10821612
Alignment:
| Q |
27 |
tgtaattaaattcattgtaattctaaaaagaaaatgtgtcaatattctttaatttgtatattgagagaga---tattattcatattctttaattttgtac |
123 |
Q |
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| T |
10821438 |
tgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtatattgagagagatattattattcatattc-----ctttgtac |
10821532 |
T |
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| Q |
124 |
tacttaacaagttcaactttgatgatccgacggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataag |
203 |
Q |
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| T |
10821533 |
aactttacaagttcacctttgatgattcaactgatatatgtttaaaaagtcaatatatcataaactatgtaacaaataag |
10821612 |
T |
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