View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16705_low_1 (Length: 744)
Name: NF16705_low_1
Description: NF16705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16705_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 13726431 - 13726690
Alignment:
| Q |
6 |
gaagcatagggtttatgtggccttgtaatggatacggtaacactaagatgtgtggtgcatgttttttgcttttattctccattgatttttgtggtgtctc |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13726431 |
gaagcatagggtttatgtgaccttgtaatggatatggaaacactaagatgtgtggtgcatgttttttgcttttattctccattgatttttgtggtgtctc |
13726530 |
T |
|
| Q |
106 |
ttttcttctggaatgtgtttatatatgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatccattgaacaaaaaagattgcaaag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
13726531 |
ttttcttctggaatgtgtttatatatgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatgcattgaacaaaaaagatagcaaag |
13726630 |
T |
|
| Q |
206 |
catcaattgattgtgacctttccatgtaggatttagaccttttcctaatgtggtgtggca |
265 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13726631 |
catcaagtgattgtgacctttccatgtaggattttgaccttttcctaatgtggtgtggca |
13726690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 526 - 744
Target Start/End: Original strand, 13728657 - 13728875
Alignment:
| Q |
526 |
atggcataaaactatgaaactccttgatgagggacctaacagtgtgtaccaaagtatgggaatctgactcaaatatcttgttgtcccatcctttatcagc |
625 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13728657 |
atggtataaaattatgaaactccttgatgagggacctaacagtgtgtaccaaagtatgggaatctgactcaaatatcttgttgtcccaacctttatcagc |
13728756 |
T |
|
| Q |
626 |
agctaaaccaatagcggtttgggtttgagtgagtctagacttgggtagttactgacaaatttgaaatcaatgtcaaaaattaagatttccctttaagatt |
725 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13728757 |
agctaaaccaatagcggtttgggtttgagcgagtctagacttgggtagttactgacaaatttgaaatcaatgtcaaaaattaagatttccctttaagatt |
13728856 |
T |
|
| Q |
726 |
tcaatgccaaaaattgttc |
744 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13728857 |
tcaatgccaaaaattgttc |
13728875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 305 - 527
Target Start/End: Original strand, 13726980 - 13727204
Alignment:
| Q |
305 |
caccaacatcgagcatttcaatagaaggaagaacaacaatgccaacttggggaaannnnnnn-atattgtagcaaaagatgttcaatacaaggaggataa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13726980 |
caccaacatcgagcatttcaatagaaggaaggacaacaatgccaacttggggaaactttttttatattgtagcaaaagatgttcaatacaaggaggataa |
13727079 |
T |
|
| Q |
404 |
ttctcaaaaat-atggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataaacttcacgttaaagcta |
502 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13727080 |
ttctcaaaaattacggtgacaagaccaagaacaggtcgccgtagcaagactatgagcaagcgtgtttgtttgttgcctaataaacttcacgttaaagcta |
13727179 |
T |
|
| Q |
503 |
attcaatattaatagaagatataat |
527 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13727180 |
attcaatattaatagaagatataat |
13727204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 386 - 450
Target Start/End: Original strand, 49525056 - 49525120
Alignment:
| Q |
386 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaag |
450 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||| || |||||||||| |||| ||||||| |
|
|
| T |
49525056 |
tcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaacagaccgccctagcaag |
49525120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 489
Target Start/End: Original strand, 8670176 - 8670279
Alignment:
| Q |
386 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataa |
485 |
Q |
| |
|
|||||||||||| || || ||||||| ||| || ||| || ||||||||||| |||| ||| |||| | ||||||| ||||||||||| |||||| || |
|
|
| T |
8670176 |
tcaatacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagtgtgagcaaccatgtttgtttgtcgcctaacaa |
8670275 |
T |
|
| Q |
486 |
actt |
489 |
Q |
| |
|
|||| |
|
|
| T |
8670276 |
actt |
8670279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University