View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16705_low_8 (Length: 237)
Name: NF16705_low_8
Description: NF16705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16705_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 16220867 - 16221082
Alignment:
| Q |
1 |
tgccgcaaaagttgtataaatttaattgtacaaatatcatttctcaataatacatttttcattcctaatttttccatttaaattataaacatggttggat |
100 |
Q |
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| T |
16220867 |
tgccgcaaaagttgtataaatttagttgtacaaatatcatttatctataatacatttttcattcctaatttt---atatcaa--ataaacatggttggat |
16220961 |
T |
|
| Q |
101 |
gcaagttatgtacatgtgtttcctattatttatttacattttttattacaatgatgtatgtgtttccgttaatgttgaatgcttagggtatccaagttta |
200 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16220962 |
gcaagtgatttacatgtgtttcctattatttatttacattttttattacaatgatgtatgtgtttctgttaatgttgaatgcttagggtatccaagttta |
16221061 |
T |
|
| Q |
201 |
atcattaattaacataactag |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
16221062 |
atcattaattaacataactag |
16221082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 42652539 - 42652495
Alignment:
| Q |
7 |
aaaagttgtataaatttaattgtacaaatatcatttctcaataat |
51 |
Q |
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| T |
42652539 |
aaaagttgtcaaaatttaattgtacaaatatcatttctcattaat |
42652495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 34208305 - 34208264
Alignment:
| Q |
7 |
aaaagttgtataaatttaattgtacaaatatcatttctcaat |
48 |
Q |
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| T |
34208305 |
aaaagttgtatcaaaataattgtacaaatatcatttctcaat |
34208264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 15918038 - 15918066
Alignment:
| Q |
22 |
ttaattgtacaaatatcatttctcaataa |
50 |
Q |
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| T |
15918038 |
ttaattgtacaaatatcatttctcaataa |
15918066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 19983863 - 19983835
Alignment:
| Q |
23 |
taattgtacaaatatcatttctcaataat |
51 |
Q |
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| T |
19983863 |
taattgtacaaatatcatttctcaataat |
19983835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 35570840 - 35570812
Alignment:
| Q |
18 |
aaatttaattgtacaaatatcatttctca |
46 |
Q |
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|
| T |
35570840 |
aaatttaattgtacaaatatcatttctca |
35570812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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